View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16045_low_2 (Length: 496)
Name: NF16045_low_2
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 242 - 477
Target Start/End: Complemental strand, 16645006 - 16644768
Alignment:
| Q |
242 |
ctcactagtttcgtaattttaacaatgtaatatgttactactacttactagtgtagtggatgcaactctaaactgcactagcattcgtgccctttacagg |
341 |
Q |
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| T |
16645006 |
ctcactagtttcgtatttttaacaatgtaatatgttactactacttactagtgtagtggatgcaactctaaaatgcactagcattcgttctctttacagg |
16644907 |
T |
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| Q |
342 |
catgaaaatatatatagtagttgtaagtatttacgagattcagccctctctttcaacaactaaaaaagaatcttttcatctgttccttgtcaatg---ga |
438 |
Q |
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| T |
16644906 |
catgaaaaaatatatagtagttgtaagtatttacgagattcagccctctctttcaacaactaaaaaagaatcttttcatctgttccttttcaatgcatga |
16644807 |
T |
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| Q |
439 |
gtacaaagtattggtaatgacaataactggtgtggggat |
477 |
Q |
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| T |
16644806 |
ctacaaagtattggtaatgacaataactggtgtggggat |
16644768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 16645213 - 16645070
Alignment:
| Q |
24 |
ggaattagagagtgatacagtgaccaaaaggatcattcgtgacaacataatttcaaatggtgaaacagctcaagctcctaatgatgtattggctttctct |
123 |
Q |
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| T |
16645213 |
ggaattagagaatgacacagtgaccaaaaggatcattcgtgacaacataatttcaaatggtgaaacagctcaagctcctaatgatgtattggctttctct |
16645114 |
T |
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| Q |
124 |
cgatcagttcataaagttgattcctcactcgaatgatccatgta |
167 |
Q |
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| T |
16645113 |
cgatcagttcataaagttgattcctcactcgaatgattcatgta |
16645070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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