View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16045_low_3 (Length: 367)
Name: NF16045_low_3
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 32087117 - 32086757
Alignment:
| Q |
1 |
aaccattatccactgagattttaggcgtgtatatatgatgatccgccgatcaagttgcaccaggatcattgtagaattgagcctttgcccaatacgaaat |
100 |
Q |
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| T |
32087117 |
aaccattatccactgaaattttaggcgtgtatatatgatgatccgccgatcaagttgcaccaggatcattgtagaattgagcctttgcccaatacgaaat |
32087018 |
T |
|
| Q |
101 |
tattttatgtcctgtttcacatccaaccaaacaagtaattgacagcacaaaaacaacaaaggagtagttgctgctatccaataatttttggtgttatgta |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32087017 |
tattttatgt-----ttcacatccaaccaaacaagtaattgacagcacaaaaacaacaaaggagtagttgctgctatccaataatttttggtgttatgta |
32086923 |
T |
|
| Q |
201 |
cgtatcattcagatttt-cttcaccaaatcgccaacacgtccatgactcaaatcctcagcaattataactgcattgtggatccaactcacccctacacca |
299 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32086922 |
cgtatcattcagatttttcttcaccaaattgccaacacgtccatgacccaaatcctcagcaattataactgcattgtggatccaactcacccctacacca |
32086823 |
T |
|
| Q |
300 |
atcaaatagggcagcattattatacaaataatacaatttcgtttttaaaaaatgatgatgtccatc |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32086822 |
atcaaatagggcagcattattatacaaataatacaatttcgtttttaaaaaatgatgatgtgcatc |
32086757 |
T |
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