View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16045_low_4 (Length: 367)
Name: NF16045_low_4
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 17584209 - 17584022
Alignment:
| Q |
18 |
ttacaagcaatgtgttacctaaaccttgctgtcagagaaggaagagaaagttagctgtccttttccatatgacaaattgcctgttgaaaatgttcagttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17584209 |
ttacaagcaatgtgttacctaaaccttgctgtcagagaaggaagagaaagttagctgtccatttccagatgacaaattgcctgttgaaaatgttcagttg |
17584110 |
T |
|
| Q |
118 |
aagacttgttccttaagaagggtctcatttttgtgaccaactaatgcactagaatgttgaatgtaatacataatgacttcactgtcat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17584109 |
aagacttgttccttaagaagggtctcatttttgtgaccaactaatgcactagaatgttgaatgtaatacataatgacttcactgtcat |
17584022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 17583944 - 17583870
Alignment:
| Q |
285 |
tgttggttaagattgtgtaagcattttatctaaatcataatggatattattgaagtctctaggttttgatgatgt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17583944 |
tgttggttaagattgtgtaagcattttatctaattcataatggatattattgaagtctctaggttttgatgatgt |
17583870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University