View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16045_low_5 (Length: 362)
Name: NF16045_low_5
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 18915790 - 18915754
Alignment:
| Q |
314 |
ggaattgaacccgacgtgaatcgaacacgcaaccttc |
350 |
Q |
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| T |
18915790 |
ggaattgaacccgacgtgaatcgaacacgcaaccttc |
18915754 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 55048399 - 55048435
Alignment:
| Q |
314 |
ggaattgaacccgacgtgaatcgaacacgcaaccttc |
350 |
Q |
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| T |
55048399 |
ggaattgaacccgacgtgaatcgaacacgcaaccttc |
55048435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 41128264 - 41128296
Alignment:
| Q |
318 |
ttgaacccgacgtgaatcgaacacgcaaccttc |
350 |
Q |
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| T |
41128264 |
ttgaacccgacgtgaatcgaacacgcaaccttc |
41128296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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