View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16045_low_7 (Length: 355)
Name: NF16045_low_7
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 31162932 - 31162589
Alignment:
| Q |
1 |
ttgttccctctaatgaatgcatcatcaccctgcttgttcttcagttgatccatcttcatgtgtaccttactagaagcataatgtaacaaatatagatgga |
100 |
Q |
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| T |
31162932 |
ttgttccctctaatgaatgcatcataaccctgcttgttcttcagttgatctatctttatgtgtaccttactagaagcataatgtaacaaatatagatgga |
31162833 |
T |
|
| Q |
101 |
tatatgcaccaacctacaccaatcaaccacaaaaaagacatcaattccacgtgcattgattcatttttagttttactccaaagtatgttgagaagtcgct |
200 |
Q |
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| T |
31162832 |
tatatgcaccaacctacaccaatcaaccacaaaaaagacatcaattccacgtgcattgattca-ttttagttttactccaaaatatgttgagaagtcgct |
31162734 |
T |
|
| Q |
201 |
gtttggacttgcaacttgtgtgtgtgaaagtgatgtaattaattgggtgagtgaagtagggtatactgaaaaggaaaaccgaaagatgtgggaactttac |
300 |
Q |
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| T |
31162733 |
gtttggacttgcaacttgtgtgtgtgaaagtgatgtaattaattgggtgagtgaagtagggtatactgagaaggaaaaccgaaagatgtgggaactttac |
31162634 |
T |
|
| Q |
301 |
tatctttgagnnnnnnntcaactaacatgctattgctaagaataa |
345 |
Q |
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| T |
31162633 |
tatctttgagaaaaaaatcaactaacatgctattgctaagaataa |
31162589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 31144678 - 31144629
Alignment:
| Q |
74 |
aagcataatgtaacaaatatagatggatatatgcaccaacctacaccaat |
123 |
Q |
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| T |
31144678 |
aagcataatgtaacaaaaatagatggacatatgcaccaacctacaccaat |
31144629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 31145461 - 31145409
Alignment:
| Q |
71 |
tagaagcataatgtaacaaatatagatggatatatgcaccaacctacaccaat |
123 |
Q |
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||||||||||||| |||||||| |||| || ||||||||||| |||||||||| |
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| T |
31145461 |
tagaagcataatgaaacaaataaagatcgacatatgcaccaatctacaccaat |
31145409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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