View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16045_low_9 (Length: 331)
Name: NF16045_low_9
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 45359947 - 45359623
Alignment:
| Q |
1 |
tcgatgccggtaaagatggcgatgccagtgatgaagatgaagagtaattttagattgaataatagttactgcagaaaatagaatcctgtgggtcatccca |
100 |
Q |
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| T |
45359947 |
tcgatgccggtaaagatggcggtgccagtgatgaagatgaagagtaattttagattgaataatagttactgcagaaaatagaatcctgtgggtcatccca |
45359848 |
T |
|
| Q |
101 |
cagctaaatttcattttcattctcctgttagctgtctatacaggttaaagctttgttaggtatatttggtttgagctgtgaccttttctaagatagatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45359847 |
cagctaaatttcattttcattctcctgttagctgtctatacaggttaaagctttgttaggtatatttggtttgagctgtgaccttttctatgatagatgc |
45359748 |
T |
|
| Q |
201 |
tctaaattaggatcgtgctctgtaccatatttagatgtaacccgctcctctttattacagatttgtcattttatttttcatgttgaatagtctgttttgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45359747 |
tctaaattaggatcgtgctctgtaccatatttagatgtaacccgctcctctttattacagatttgtcattttatttttcatgttgaatagtttgttttgc |
45359648 |
T |
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| Q |
301 |
acctgcatgtaaacattattattgc |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
45359647 |
acctgcatgtaaacattattattgc |
45359623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45359983 - 45359948
Alignment:
| Q |
1 |
tcgatgccggtaaagatggcgatgccagtgatgaag |
36 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45359983 |
tcgatgccggtaaagatggcgatgccagtgatgaag |
45359948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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