View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_high_10 (Length: 378)
Name: NF16046_high_10
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 33887637 - 33887829
Alignment:
| Q |
57 |
agagtcaagctcactgagatactacctat-tttgaaagaaaggtagaacaactaatgctaaaaacaattgacaatcctttagaagacacagtttaactct |
155 |
Q |
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| T |
33887637 |
agagtcaagctcactgagatactacctatatttgaaagaaaggtagaataattggtgctaaaaacaatcgacaatcctttagaagacacagttttactct |
33887736 |
T |
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| Q |
156 |
caccacagttttaaacttctaaaggaatggtttctaacttaggtggtatctcatctct-----tcaactcaactcataaaaacaattctacaa |
243 |
Q |
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| T |
33887737 |
caccacagttttaaacttctaaatgaatggtttctaacttagatggtatctcatcacttcaactcaactcaactcataaaaacaattctacaa |
33887829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 33956613 - 33956421
Alignment:
| Q |
57 |
agagtcaagctcactgagatactacctat-tttgaaagaaaggtagaacaactaatgctaaaaacaattgacaatcctttagaagacacagtttaactct |
155 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
33956613 |
agagtcaagctcactgagatactacctatatttgaaagaaaggtagaataattggtgctaaaaacaatcgacaatcctttagaagacacagttttactct |
33956514 |
T |
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| Q |
156 |
caccacagttttaaacttctaaaggaatggtttctaacttaggtggtatctcatctcttcaactcaa-----ctcataaaaacaattctacaa |
243 |
Q |
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| T |
33956513 |
caccacagttttaaacttctaaatgaatggtttctaacttagatggtatctcatcacttcaactcaactcaactcataaaaacaattctacaa |
33956421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 281 - 371
Target Start/End: Original strand, 33887828 - 33887918
Alignment:
| Q |
281 |
aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttgatcttcaattgtagtataatct |
371 |
Q |
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| T |
33887828 |
aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttggtcttcaattgtagtataatct |
33887918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 281 - 371
Target Start/End: Complemental strand, 33956422 - 33956332
Alignment:
| Q |
281 |
aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttgatcttcaattgtagtataatct |
371 |
Q |
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| T |
33956422 |
aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttggtcttcaattgtagtataatct |
33956332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 52469 - 52510
Alignment:
| Q |
174 |
ctaaaggaatggtttctaacttaggtggtatctcatctcttc |
215 |
Q |
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| T |
52469 |
ctaaaggaatgatttctaatttaggtggtatctcatcacttc |
52510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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