View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_high_14 (Length: 276)
Name: NF16046_high_14
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 67 - 258
Target Start/End: Original strand, 8446873 - 8447066
Alignment:
| Q |
67 |
ccaaatgccagcaacataagagttagaaatttgcatctctccctct--caaacatctggtgaaaaatttgcaacgacccacattttgcaatacatatcaa |
164 |
Q |
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| T |
8446873 |
ccaaatgccaacaacataagagttagaaatttgcatctctccctctctcaaacatctggtgaaaaatttgcaacgacccacattttgcaatacatatcaa |
8446972 |
T |
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| Q |
165 |
ccaaacaagttttgaccaaaacattataagcagatttgtagtcacacnnnnnnnaaacataagcgtgaatggaccttattcttccctttcatat |
258 |
Q |
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| T |
8446973 |
ccaaacaagttttgaccaaaacattataagcagatttgtagtcacactttttttaaacataagcgtgaatggaccttattcttccctttcatat |
8447066 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 19452129 - 19452187
Alignment:
| Q |
129 |
aatttgcaacgacccacattttgcaatacatatcaaccaaacaagttttgaccaaaacat |
188 |
Q |
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| T |
19452129 |
aatttccaacgatccacattta-caatacatatcaaccaaacaagtattaaccaaaacat |
19452187 |
T |
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