View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_high_16 (Length: 256)
Name: NF16046_high_16
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 43792856 - 43792709
Alignment:
| Q |
98 |
aagtcagcattgtatgatgtgccagtaatataattgctcctcaaagctaagaaaccaatcttaagatttaaacattttatatatttgcattttccatggc |
197 |
Q |
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| T |
43792856 |
aagtcagcattgtatgatgtgccagtaatataattgctcctcaaagctaagaaaccaatcttaagatttaaacattttatatatttgcattttccatggc |
43792757 |
T |
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| Q |
198 |
ttccattttgagattaaagaagcaagttgttgttactgaattattctt |
245 |
Q |
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| T |
43792756 |
ttccattttgagattaaagaagcaagttgttgttactgaattattctt |
43792709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 43793013 - 43792946
Alignment:
| Q |
20 |
ttatttaactataagtatatcccttttttatttacaaatattgatatagcctcttaacaccaggaaag |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43793013 |
ttatttaactataagtatatcccttttttatttacaaatattgatatagcctcttaacaccaggaaag |
43792946 |
T |
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