View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16046_high_19 (Length: 243)
Name: NF16046_high_19
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 50803664 - 50803475
Alignment:
| Q |
5 |
tgatgatcagaatggtgcctagttgtgctcagatcatcatttcatttgaatgtaaatcattctgcttgcattttttattttctcgcattgattagatgga |
104 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50803664 |
tgatgattacaatggggcctagttgtgctcatatcatcatttcatttgaatgtaaatcattctgcttgcattttttattttcttgcattgattagatgga |
50803565 |
T |
|
| Q |
105 |
gacttgtgtgctattgaagacatttatgtgggtcatgttattattacatttaccacaaattcataaacaatattgcaatatgcactattc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50803564 |
gacttgtgtgctattgaagacatttatgtgggtcatgttattattacatttaccacaaattcataaacaatattgcaatatgcactattc |
50803475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 50872213 - 50872402
Alignment:
| Q |
5 |
tgatgatcagaatggtgcctagttgtgctcagatcatcatttcatttgaatgtaaatcattctgcttgcattttttattttctcgcattgattagatgga |
104 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50872213 |
tgatgattacaatggggcctagttgtgctcatatcatcatttcatttgaatgtaaatcattctgcttgcattttttattttcttgcattgattagatgga |
50872312 |
T |
|
| Q |
105 |
gacttgtgtgctattgaagacatttatgtgggtcatgttattattacatttaccacaaattcataaacaatattgcaatatgcactattc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50872313 |
gacttgtgtgctattgaagacatttatgtgggtcatgttattattacatttaccacaaattcataaacaatattgcaatatgcactattc |
50872402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 19058247 - 19058436
Alignment:
| Q |
5 |
tgatgatcagaatggtgcctagttgtgctcagatcatcatttcatttgaatgtaaatcattctgcttgcattttttattttctcgcattgattagatgga |
104 |
Q |
| |
|
||||||| | ||||| ||||| |||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19058247 |
tgatgattacaatggggcctaactgtgctcataccatcatttcatttgaatgcaaatcattctgcttgcattttttattttcttgcattgattagatgga |
19058346 |
T |
|
| Q |
105 |
gacttgtgtgctattgaagacatttatgtgggtcatgttattattacatttaccacaaattcataaacaatattgcaatatgcactattc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19058347 |
gacttgtgtgctattgaagacatttatgtgggtcatgttattattacatttaccacaaattcataaacaatgttgcaatatgcactattc |
19058436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 5286737 - 5286927
Alignment:
| Q |
5 |
tgatgatcagaatggtgcctagttgtgctcagatcatcatttcatttgaatgtaaatcattctgcttgcattttttattttctcgcattgattagatgga |
104 |
Q |
| |
|
||||||| | ||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5286737 |
tgatgattacaatggggcctaactgtgctcatgccatcatttcatttgaatgtaaaccattctgcttgcattttttattttcctgcattgattagatgga |
5286836 |
T |
|
| Q |
105 |
gacttgtgtgctattgaagacatttatgtgggtcatgttattattacatttaccacaaattcataaacaatattgc-aatatgcactattc |
194 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
5286837 |
gacttgtgtgctattggagacatttatgcgggtcatgttattattacatttaccacaaattcataaacaatgttgcaaatatgcactattc |
5286927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University