View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16046_high_2 (Length: 643)
Name: NF16046_high_2
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 11 - 626
Target Start/End: Original strand, 43985121 - 43985736
Alignment:
| Q |
11 |
agcaaaggcataagtgtaacatccttagcaagaacaccagcaacatccacaccaccattaacacatagagacaacaatatcgaaacacaatgttcctttg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985121 |
agcaaaggcataagtgtaacatccttagcaagaacaccagcaacatcaacaccaccattaacacatagagacaacaatatcgaaacacaatgttcctttg |
43985220 |
T |
|
| Q |
111 |
cagcacgcgaaggagcagatcgcaacagcccagcaatcaacggcaatgcagaagcttccaaaacagcattagctccatcaaaattctcagcaagtgccgc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985221 |
cagcacgcgaaggagcagatcgcaacagcccagtaatcaacggcaatgcagaagcttccaaaacagcattagctccatcaaaattctcagcaagtgccgc |
43985320 |
T |
|
| Q |
211 |
aagaacagccaaagtttcagtaacaagctcttccttgttgcacaaggtattcaaaatagaaacaagcgcgtgaacagcaccggcttcaagcacacgttga |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985321 |
aagaacagccagagtttcagtaacaagctcttccttgttgcacaaggtattcaaaatagaaacaagcgcgtgaacagcaccggcttcaagcacacgttga |
43985420 |
T |
|
| Q |
311 |
tgattcctaggaagcaaaagaagtccaaaaatggcaaccactgcattctttttcccgcaggttgttccttctttagccaattcaactaaaccatgaatca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985421 |
tgattcctaggaagcaaaagaagtccaaaaatcgcaaccactgcattcttttttccgcaggttgttccttctttagccaattcaactaaaccatgaatca |
43985520 |
T |
|
| Q |
411 |
catcttgattttcacctattaattttctatattctttcactgaacaaagatagaatattatagcagctgcaatttgacgggcttcaagactaagtccatt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985521 |
catcttgattttcacctattaattttctatattctttcactgaacaaagatagaatattatagctgctgcaatttgacgggcttcaagactaagtccatt |
43985620 |
T |
|
| Q |
511 |
tttcagtacatacacaacgggatttaaaccgttatggtctattatattttcaggcccggttgcatactttgaaagcttcagtaaagcagagattgcattc |
610 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985621 |
tttcagtacatacacaacgggctttaaaccgttatggtctattatattttcaggcccggttgcatactttgaaagcttcagtaaagcagagattgcattc |
43985720 |
T |
|
| Q |
611 |
tcctgagtggttttat |
626 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43985721 |
tcctgagtggttttat |
43985736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 495
Target Start/End: Original strand, 35205835 - 35205912
Alignment:
| Q |
418 |
attttcacctattaattttctatattctttcactgaacaaagatagaatattatagcagctgcaatttgacgggcttc |
495 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||| || || ||||||||| ||||||||| | |||||||||| |
|
|
| T |
35205835 |
attttcgcctattaattttctgtactctttcactgaagtgaggtaaaatattataccagctgcaactcgacgggcttc |
35205912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University