View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16046_high_20 (Length: 228)

Name: NF16046_high_20
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16046_high_20
NF16046_high_20
[»] chr1 (1 HSPs)
chr1 (9-212)||(10469254-10469457)
[»] chr3 (2 HSPs)
chr3 (9-212)||(52102785-52102988)
chr3 (142-212)||(44311648-44311718)
[»] chr2 (1 HSPs)
chr2 (9-212)||(42148937-42149133)
[»] chr8 (1 HSPs)
chr8 (133-193)||(17938462-17938522)
[»] chr4 (2 HSPs)
chr4 (12-59)||(29125864-29125911)
chr4 (143-193)||(36382617-36382667)
[»] scaffold0291 (1 HSPs)
scaffold0291 (133-184)||(19102-19153)
[»] chr7 (3 HSPs)
chr7 (147-193)||(4126982-4127028)
chr7 (143-190)||(5960716-5960763)
chr7 (133-193)||(43845609-43845669)
[»] chr6 (1 HSPs)
chr6 (143-190)||(6826858-6826905)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 10469254 - 10469457
Alignment:
Q  9 tagattattcttattccaaacaaaattctctttttcagcttccaaaaaacaaatctagaagggttccgatcaacaactccagaaaacggttaccatccgg 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10469254 tagattattattattccaaacaaaattctctttttcagcttccaaaaaacaaatctagaagggttccgatcaacaactccagaaaacggttactatccgg 10469353  T
Q  109 cagctgtcggaagaaaagagatgagcggcggcatgttggttagtgttggttgcgggatggtggagttcgctcatgacgctgacggcaacgaagaatggtg 208  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10469354 cagctgtcggaagaaaagagatgagcggcgtcgtgttggttagtgttggttgcgggatggtggagttcgctcatgacgctgacggcaacgaagaatggtg 10469453  T
Q  209 tgtg 212  Q
    ||||    
T  10469454 tgtg 10469457  T

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Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 52102988 - 52102785
Alignment:
Q  9 tagattattcttattccaaacaaaattctctttttcagcttccaaaaaacaaatctagaagggttccgatcaacaactccagaaaacggttaccatccgg 108  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52102988 tagattattattattccaaacaaaattctctttttcagcttccaaaaaacaaatctagaagggttccgatcaacaactccagaaaacggttatcatccgg 52102889  T
Q  109 cagctgtcggaagaaaagagatgagcggcggcatgttggttagtgttggttgcgggatggtggagttcgctcatgacgctgacggcaacgaagaatggtg 208  Q
    || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52102888 caactgtcggaagaaaagagatgagcggcgacgtgttggttagtgttggttgcgggatggtggagttcgctcatgacgctgacggcaacgaagaatggtg 52102789  T
Q  209 tgtg 212  Q
    ||||    
T  52102788 tgtg 52102785  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 44311718 - 44311648
Alignment:
Q  142 tgttggttagtgttggttgcgggatggtggagttcgctcatgacgctgacggcaacgaagaatggtgtgtg 212  Q
    ||||||||  |||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||    
T  44311718 tgttggttgatgttggttgcgggatggtggagtttgctcatgacgccgacgacgacgaagaatggtgtgtg 44311648  T

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Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 42149133 - 42148937
Alignment:
Q  9 tagattattcttattccaaacaaaattctctttttcagcttccaaaaaacaaatctagaagggttccgatcaacaactccagaaaacggttaccatccgg 108  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  42149133 tagattattattattccaaacaaaattctctttttcagctttcaaaaaacaaatctagaagggttccgatcaacaactccagaaaacggtgaccgtccgg 42149034  T
Q  109 cagctgtcggaagaaaagagatgagcggcggcatgttggttagtgttggttgcgggatggtggagttcgct---catgacgctgacggcaacgaagaatg 205  Q
    ||||| |||||||||||||| |||||||||||          ||||||||||||||||||||||||    |   |||||||||||| |||||||||||||    
T  42149033 cagctatcggaagaaaagaggtgagcggcggc----------gtgttggttgcgggatggtggagtgatattagcatgacgctgacagcaacgaagaatg 42148944  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 17938522 - 17938462
Alignment:
Q  133 gcggcggcatgttggttagtgttggttgcgggatggtggagttcgctcatgacgctgacgg 193  Q
    ||||||||  ||| |||||||||||| |||||||||||| |||||||||||||||||||||    
T  17938522 gcggcggcgggttcgttagtgttggtagcgggatggtggggttcgctcatgacgctgacgg 17938462  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 29125911 - 29125864
Alignment:
Q  12 attattcttattccaaacaaaattctctttttcagcttccaaaaaaca 59  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  29125911 attattattattccaaacaaaattctctttttcaacttccaaaaaaca 29125864  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 36382667 - 36382617
Alignment:
Q  143 gttggttagtgttggttgcgggatggtggagttcgctcatgacgctgacgg 193  Q
    ||||| |||||||||| ||||||||||||  ||||||||||||||||||||    
T  36382667 gttggctagtgttggtagcgggatggtgggattcgctcatgacgctgacgg 36382617  T

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Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 19102 - 19153
Alignment:
Q  133 gcggcggcatgttggttagtgttggttgcgggatggtggagttcgctcatga 184  Q
    ||||||||| |||||||||||||||  |||||||||||| ||||||||||||    
T  19102 gcggcggcaggttggttagtgttggaagcgggatggtggggttcgctcatga 19153  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 4127028 - 4126982
Alignment:
Q  147 gttagtgttggttgcgggatggtggagttcgctcatgacgctgacgg 193  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||||    
T  4127028 gttagtgttggtagcgggaaggtggggttcgctcatgacgctgacgg 4126982  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 5960716 - 5960763
Alignment:
Q  143 gttggttagtgttggttgcgggatggtggagttcgctcatgacgctga 190  Q
    ||||| |||||||||| |||||||||||| |||| |||||||||||||    
T  5960716 gttggctagtgttggtagcgggatggtggggttctctcatgacgctga 5960763  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 43845609 - 43845669
Alignment:
Q  133 gcggcggcatgttggttagtgttggttgcgggatggtggagttcgctcatgacgctgacgg 193  Q
    ||||||||  ||| |||||||||||| || ||||||||| |||| ||||||| ||||||||    
T  43845609 gcggcggcgggttcgttagtgttggtagcaggatggtggggttcactcatgatgctgacgg 43845669  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 6826905 - 6826858
Alignment:
Q  143 gttggttagtgttggttgcgggatggtggagttcgctcatgacgctga 190  Q
    ||||| |||||||||| |||||||||||| |||| |||||||||||||    
T  6826905 gttggctagtgttggtagcgggatggtggggttctctcatgacgctga 6826858  T

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