View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_1 (Length: 937)
Name: NF16046_low_1
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 590 - 929
Target Start/End: Original strand, 46090967 - 46091306
Alignment:
| Q |
590 |
gagagcaattaatgccagtaatctagctagtgaagtttttctaatcaggttcatcttatttaatattaaaatttatcaatttggaaataatatttcaaaa |
689 |
Q |
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| T |
46090967 |
gagagcaattaatgccagtaatctagctagtgaagtttttctaatcaggttcatcttatttaatattaaaatttatcaatttggaaataatatttcaaaa |
46091066 |
T |
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| Q |
690 |
acnnnnnnncctcttttgaattggcgcgcaaccgcaaagattaatatcttgtatcgggtaggactgcaataagtgacaaaattctcactcaagagattta |
789 |
Q |
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| T |
46091067 |
actttttttcctcttttgaattggcgcgcaaccgcaaagattaatatcttatgtcgggtaggactgcaataagtgacaaaattctcactcaagagattta |
46091166 |
T |
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| Q |
790 |
acactattgcatttcgagaataatatttgaactcagaacctatggttacgatggaatctcatccaagtgcatatatttcaaaactttattaaaggaggtc |
889 |
Q |
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| T |
46091167 |
acactattgtatttcgagaataatatttgaactcagaacctatggttatgatggaatctcatccaagtgcatatatttcaaaactttattaaaggaggtc |
46091266 |
T |
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| Q |
890 |
tagagtcaattcattgatgcaatatcttgtatgtgatgat |
929 |
Q |
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| T |
46091267 |
tagagtcaattcactgttgcaatatcttgtatgtgatgat |
46091306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 226 - 515
Target Start/End: Original strand, 46090603 - 46090893
Alignment:
| Q |
226 |
ttggtttcttctatttgtctctgccatcattattcttagcattgcaggtactatcttgtcttatctgccatttaattgctgcagttacaattcaatttca |
325 |
Q |
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| T |
46090603 |
ttggtttcttctatttgtctctgccatcattattcttagcattgcaggtactaccttgtcttatctgccatttaatagttgcagttacaattcaatttca |
46090702 |
T |
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| Q |
326 |
ttaatgtaaacgaaattcgaattacannnnnnnnggaccacttgtgatttttaaaataatatttgaatattgtttnnnnnnnnnctcttaaattgcagac |
425 |
Q |
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| T |
46090703 |
ttaatgtaaacgaaattcgaattacattttttttggaccacttgtgatttttaaaataatatttgaatattgtttaaaaaaaaactcttaaattgcagac |
46090802 |
T |
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| Q |
426 |
actgcatgatcttataccatgcgactttaatt-gattaagaagcttggacccttcacattagaggctcaattcaatactgaacaattattg |
515 |
Q |
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| T |
46090803 |
actgcatgatcttataccatgcgactttaattggattaagaagcttggacccttcacattagaggctcaattcaatactgaacaattattg |
46090893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 46090395 - 46090503
Alignment:
| Q |
18 |
ctaaaaactccggccaattaacaactgttgtgcgttttaccattaccagaagggttgccttaacctcaaagcaacaatctgttgttctgactcttccctc |
117 |
Q |
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| T |
46090395 |
ctaaaaactccggccaattaacaactgttgtgcgttttaccattaccagaagggttgccttaacctcaaagcaacaatctgttgttccgactcttccctc |
46090494 |
T |
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| Q |
118 |
ttgtcaaag |
126 |
Q |
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| T |
46090495 |
ttgtcaaag |
46090503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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