View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16046_low_14 (Length: 281)

Name: NF16046_low_14
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16046_low_14
NF16046_low_14
[»] chr6 (30 HSPs)
chr6 (18-117)||(34829986-34830085)
chr6 (177-253)||(34829850-34829926)
chr6 (179-260)||(10567507-10567588)
chr6 (178-251)||(6611654-6611727)
chr6 (177-251)||(6611934-6612008)
chr6 (189-267)||(10567742-10567820)
chr6 (177-267)||(17342930-17343020)
chr6 (177-267)||(22793343-22793433)
chr6 (177-267)||(29674919-29675009)
chr6 (187-257)||(32629115-32629185)
chr6 (200-267)||(6273653-6273720)
chr6 (181-260)||(13498365-13498444)
chr6 (177-260)||(32629338-32629421)
chr6 (177-243)||(29674890-29674956)
chr6 (185-258)||(6273877-6273950)
chr6 (190-251)||(28613463-28613524)
chr6 (200-267)||(22793577-22793644)
chr6 (207-267)||(28613238-28613298)
chr6 (200-243)||(6611647-6611690)
chr6 (200-243)||(22793337-22793380)
chr6 (217-267)||(17343165-17343215)
chr6 (189-254)||(24394039-24394104)
chr6 (177-238)||(28705819-28705880)
chr6 (177-257)||(11122192-11122271)
chr6 (211-267)||(13498153-13498209)
chr6 (200-242)||(17342924-17342966)
chr6 (214-267)||(2594230-2594283)
chr6 (200-241)||(29674884-29674925)
chr6 (198-267)||(34829615-34829684)
chr6 (177-260)||(11121940-11122023)
[»] chr4 (45 HSPs)
chr4 (177-267)||(45505340-45505430)
chr4 (177-267)||(4592636-4592726)
chr4 (177-267)||(11306534-11306624)
chr4 (186-267)||(49984079-49984160)
chr4 (177-267)||(4416518-4416608)
chr4 (177-267)||(17524246-17524336)
chr4 (177-267)||(20269145-20269235)
chr4 (177-267)||(4416758-4416848)
chr4 (177-267)||(18414764-18414854)
chr4 (177-267)||(20870870-20870959)
chr4 (189-267)||(45505113-45505191)
chr4 (177-267)||(49983835-49983925)
chr4 (189-257)||(18414977-18415045)
chr4 (189-257)||(46397360-46397428)
chr4 (177-260)||(48845754-48845837)
chr4 (177-267)||(48845994-48846084)
chr4 (187-267)||(2515741-2515821)
chr4 (177-265)||(43913436-43913524)
chr4 (189-267)||(36752913-36752991)
chr4 (190-267)||(54702270-54702347)
chr4 (187-267)||(17524484-17524564)
chr4 (188-267)||(2516470-2516549)
chr4 (207-267)||(37724705-37724765)
chr4 (207-267)||(45170698-45170758)
chr4 (193-256)||(37724497-37724560)
chr4 (207-260)||(20268937-20268991)
chr4 (177-267)||(52485622-52485712)
chr4 (177-257)||(31141721-31141801)
chr4 (208-267)||(45170825-45170884)
chr4 (200-243)||(49984132-49984175)
chr4 (201-243)||(11306587-11306629)
chr4 (177-227)||(12292931-12292981)
chr4 (178-256)||(12293189-12293267)
chr4 (187-257)||(16399206-16399276)
chr4 (201-243)||(45505393-45505435)
chr4 (192-257)||(48658323-48658388)
chr4 (207-267)||(20871112-20871172)
chr4 (216-264)||(40426106-40426154)
chr4 (177-260)||(52485384-52485467)
chr4 (201-239)||(17524241-17524279)
chr4 (200-257)||(5665763-5665820)
chr4 (200-241)||(31143734-31143775)
chr4 (179-247)||(21376093-21376161)
chr4 (216-260)||(24672004-24672048)
chr4 (183-267)||(43913674-43913758)
[»] scaffold0548 (2 HSPs)
scaffold0548 (177-267)||(3312-3402)
scaffold0548 (201-243)||(3365-3407)
[»] chr8 (28 HSPs)
chr8 (187-267)||(34687806-34687886)
chr8 (177-259)||(9710258-9710340)
chr8 (186-260)||(4623120-4623194)
chr8 (178-267)||(18935329-18935418)
chr8 (189-257)||(34439514-34439582)
chr8 (177-267)||(21446027-21446115)
chr8 (179-257)||(18429614-18429692)
chr8 (186-267)||(16049531-16049612)
chr8 (177-257)||(7535544-7535624)
chr8 (186-248)||(4623371-4623433)
chr8 (177-267)||(7644821-7644911)
chr8 (177-267)||(16049760-16049848)
chr8 (187-257)||(7645074-7645144)
chr8 (201-267)||(18429479-18429545)
chr8 (191-257)||(34439278-34439344)
chr8 (178-267)||(164997-165086)
chr8 (187-256)||(18548590-18548659)
chr8 (198-255)||(23871161-23871218)
chr8 (177-257)||(18935095-18935175)
chr8 (185-253)||(25879849-25879917)
chr8 (200-242)||(18935383-18935425)
chr8 (187-242)||(4623406-4623461)
chr8 (177-267)||(25879609-25879699)
chr8 (177-215)||(18935352-18935390)
chr8 (193-255)||(32665840-32665902)
chr8 (177-214)||(34687825-34687862)
chr8 (198-238)||(164988-165028)
chr8 (177-213)||(4623377-4623413)
[»] chr1 (30 HSPs)
chr1 (188-267)||(31872880-31872959)
chr1 (177-267)||(8718477-8718567)
chr1 (177-267)||(22792558-22792648)
chr1 (177-267)||(35795597-35795687)
chr1 (177-267)||(48171717-48171807)
chr1 (187-267)||(3075201-3075281)
chr1 (187-267)||(19987386-19987466)
chr1 (177-267)||(37245679-37245769)
chr1 (177-267)||(33459937-33460027)
chr1 (177-267)||(34518235-34518325)
chr1 (177-267)||(35795355-35795445)
chr1 (177-267)||(42604910-42605000)
chr1 (188-257)||(143104-143173)
chr1 (182-267)||(14420060-14420145)
chr1 (187-267)||(42604682-42604762)
chr1 (207-260)||(31872751-31872804)
chr1 (177-260)||(142853-142936)
chr1 (177-256)||(22792332-22792411)
chr1 (177-267)||(3073020-3073110)
chr1 (177-267)||(33460171-33460256)
chr1 (177-257)||(18519359-18519439)
chr1 (177-260)||(34518006-34518089)
chr1 (215-267)||(25622659-25622711)
chr1 (177-260)||(19987621-19987704)
chr1 (200-243)||(48171478-48171521)
chr1 (177-255)||(13189195-13189273)
chr1 (178-224)||(48171485-48171531)
chr1 (201-267)||(18519599-18519665)
chr1 (201-243)||(33459932-33459974)
chr1 (201-239)||(33460223-33460261)
[»] chr3 (14 HSPs)
chr3 (177-267)||(19540866-19540956)
chr3 (186-260)||(33419591-33419665)
chr3 (189-267)||(54341257-54341335)
chr3 (177-267)||(33419822-33419912)
chr3 (187-267)||(48618532-48618612)
chr3 (177-257)||(51388049-51388129)
chr3 (192-267)||(7015394-7015469)
chr3 (177-260)||(33241888-33241971)
chr3 (177-260)||(37285835-37285918)
chr3 (178-243)||(30547781-30547846)
chr3 (191-267)||(37285604-37285680)
chr3 (177-248)||(40484929-40484999)
chr3 (177-256)||(30548023-30548104)
chr3 (177-248)||(48618781-48618852)
[»] chr2 (34 HSPs)
chr2 (177-267)||(29526874-29526964)
chr2 (186-267)||(15988530-15988611)
chr2 (178-256)||(3221118-3221196)
chr2 (178-267)||(3217328-3217417)
chr2 (177-264)||(26845464-26845552)
chr2 (192-267)||(44995340-44995415)
chr2 (177-245)||(13140332-13140400)
chr2 (187-267)||(13490226-13490306)
chr2 (200-244)||(3217321-3217365)
chr2 (183-267)||(13490454-13490537)
chr2 (181-256)||(27957012-27957087)
chr2 (179-254)||(29526640-29526714)
chr2 (177-267)||(6795452-6795542)
chr2 (189-267)||(27956779-27956857)
chr2 (207-267)||(1353112-1353172)
chr2 (199-267)||(15988046-15988113)
chr2 (201-244)||(3221159-3221202)
chr2 (181-256)||(14473821-14473896)
chr2 (177-264)||(43971797-43971884)
chr2 (179-268)||(24065917-24066007)
chr2 (189-267)||(32622469-32622547)
chr2 (183-267)||(38262812-38262896)
chr2 (177-257)||(43513849-43513929)
chr2 (177-260)||(24015853-24015936)
chr2 (201-267)||(32622255-32622321)
chr2 (177-214)||(1353136-1353173)
chr2 (179-256)||(24284091-24284168)
chr2 (207-267)||(13140572-13140632)
chr2 (207-267)||(14473549-14473609)
chr2 (193-248)||(6412522-6412577)
chr2 (193-260)||(13525266-13525333)
chr2 (200-243)||(15988583-15988625)
chr2 (177-214)||(29526666-29526703)
chr2 (182-239)||(37762315-37762372)
[»] chr5 (7 HSPs)
chr5 (177-260)||(34065280-34065363)
chr5 (177-267)||(16642792-16642882)
chr5 (177-257)||(33992377-33992457)
chr5 (177-260)||(25508092-25508175)
chr5 (177-254)||(19935476-19935552)
chr5 (187-256)||(33992627-33992696)
chr5 (186-267)||(32291075-32291156)
[»] scaffold0056 (2 HSPs)
scaffold0056 (177-267)||(62768-62858)
scaffold0056 (189-267)||(63004-63082)
[»] chr7 (17 HSPs)
chr7 (179-257)||(22566347-22566423)
chr7 (190-267)||(34535746-34535823)
chr7 (190-267)||(36469815-36469892)
chr7 (187-267)||(6376418-6376498)
chr7 (177-253)||(48462087-48462163)
chr7 (187-267)||(48461844-48461924)
chr7 (177-248)||(7460613-7460684)
chr7 (186-260)||(8560680-8560754)
chr7 (177-246)||(24185711-24185779)
chr7 (187-259)||(43510932-43511003)
chr7 (201-267)||(7460851-7460917)
chr7 (177-267)||(34535964-34536054)
chr7 (200-257)||(24188189-24188246)
chr7 (177-267)||(6376640-6376730)
chr7 (177-247)||(10017894-10017964)
chr7 (214-267)||(10017671-10017724)
chr7 (177-205)||(17814018-17814046)
[»] scaffold0400 (2 HSPs)
scaffold0400 (177-260)||(9860-9943)
scaffold0400 (180-225)||(9624-9669)
[»] scaffold0365 (2 HSPs)
scaffold0365 (177-260)||(10503-10586)
scaffold0365 (180-225)||(10267-10312)
[»] scaffold0074 (1 HSPs)
scaffold0074 (189-254)||(23919-23984)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 34830085 - 34829986
Alignment:
Q  18 gatatatcattaaggacaatgccaaaaattataagtcaactaaattaaagttattttaaatcacattatgatcttttgaatgtagtaaacaaaattctac 117  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  34830085 gatatatctttaaggacaatgccaaaaattataagtaaactaaattaaagttattttaaatcacattatgatcttctgaatgtactaaacaaaattctac 34829986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 34829926 - 34829850
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttac 253  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  34829926 agttggtctcttatgttttaaaagtttcatgttggtcccttacgttttaaaggtttcaagttggttcaaaacgttac 34829850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 10567507 - 10567588
Alignment:
Q  179 ttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    |||||| |||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  10567507 ttggtcccttacgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggttcaaaacgttactcacatt 10567588  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 6611654 - 6611727
Alignment:
Q  178 gttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgtt 251  Q
    ||||||| |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||||||||    
T  6611654 gttggtcccttatgttttaaaagtttcaagttggtccctcatgttttaaaagtttcaagttggttcaaaacgtt 6611727  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 6612008 - 6611934
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgtt 251  Q
    ||||| || ||| |||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  6612008 agttgatcccttgtgttttaaaagtttcaagttggtcccttacgttttaaatgtttcaagttggtccaaaacgtt 6611934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 10567820 - 10567742
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||| |||||||| || ||||||    
T  10567820 atgttttaagagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacattactcacgttggaataa 10567742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 17342930 - 17343020
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||| ||||| |||||||  ||| |||||||| ||||||| ||||||||||||||||||||| ||| |||||    
T  17342930 agttggtcccttatgttttaaaaatttcaagttggtcttttacgttttaaaagtttcaaattggtccaaaacgttactcaccttaaaataa 17343020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 22793343 - 22793433
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| || ||  |||| ||||||| |||| || ||||||    
T  22793343 agttggtcccttatgttttaaaagtttcaagttggtcccttatgttttaaaagttttaatttcatccacaacgttagtcaccttggaataa 22793433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 29674919 - 29675009
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||  |||| ||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||||| | |||||| || ||||||    
T  29674919 agttggttccttacgttttaaaagtttcaagttggtcccttaagttttaaaagtttcaagttgatccaaaacatgactcacgttggaataa 29675009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 32629115 - 32629185
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    ||||||||||||| ||| | ||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  32629115 ttatgttttaaaaattttaagttggtcccttacattttaaaggtttcaagttagtccaaaacgttactcac 32629185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 6273653 - 6273720
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||| |||||| | |||||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  6273653 gtttcaagttggttctttatgttttaaacgttttaagttggtccaaaacgttactcacattaaaataa 6273720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 13498444 - 13498365
Alignment:
Q  181 ggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||| | | |||||  |||||||||||    
T  13498444 ggtctcttatgttttaaaagttttatgttggtctcttatgtattaaaagtttcaagtagattcaaaatattactcacatt 13498365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 32629421 - 32629338
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||||||| |||||||||||||||||   ||||||||||||| |||||||  ||||||||| || ||||||||||| ||||||    
T  32629421 agttggtcttttatgttttaaaagttttgagttggtcccttatattttaaaaatttcaagttcgttcaaaacgttacccacatt 32629338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 29674890 - 29674956
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    |||||||| ||||| |||||||||||||| |||||| ||||| |||||||| |||||||||||||||    
T  29674890 agttggtcccttatattttaaaagtttcaagttggttccttacgttttaaaagtttcaagttggtcc 29674956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 6273950 - 6273877
Alignment:
Q  185 tcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcaca 258  Q
    ||||||||||||||||||||| |||||||   ||||||||||| || ||||||||||||||| | |||||||||    
T  6273950 tcttatgttttaaaagtttcaagttggtcatgtatgttttaaaagtatcaagttggtccaaatcattactcaca 6273877  T

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Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 28613524 - 28613463
Alignment:
Q  190 tgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgtt 251  Q
    |||||||||| ||||| |||||||||||| |||||||| |||||||||||||| ||||||||    
T  28613524 tgttttaaaaatttcaagttggtcccttacgttttaaaagtttcaagttggtcaaaaacgtt 28613463  T

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Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 22793644 - 22793577
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||| |||||||||||| |||||||| |||||||||| |||||||| |||||||| ||| ||||||    
T  22793644 gtttcaagttggtcccttacgttttaaaagtttcaagtttgtccaaaatgttactcatattggaataa 22793577  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 28613238 - 28613298
Alignment:
Q  207 gttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||| |||||||| |||  ||||||||||||||||||||||| ||| ||||||    
T  28613238 gttggtcccttacgttttaaaagttgtaagttggtccaaaacgttactcatattggaataa 28613298  T

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Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 6611647 - 6611690
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  6611647 gtttcaggttggtcccttatgttttaaaagtttcaagttggtcc 6611690  T

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Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 22793337 - 22793380
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  22793337 gtttcaagttggtcccttatgttttaaaagtttcaagttggtcc 22793380  T

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Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 17343215 - 17343165
Alignment:
Q  217 tatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||| |||||| ||||||||||||||||||| ||||||||| |||||||||    
T  17343215 tatgctttaaaagtttcaagttggtccaaaatgttactcaccttagaataa 17343165  T

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Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 24394104 - 24394039
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttact 254  Q
    ||||||||||||||| | |||  |||||||||||||||||||||  | |||||| |||||||||||    
T  24394104 atgttttaaaagttttaagttactcccttatgttttaaaggttttgaattggtctaaaacgttact 24394039  T

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Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 28705880 - 28705819
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagtt 238  Q
    |||||||| ||| |||||||||| ||||| ||| |||||||||||||||||  |||||||||    
T  28705880 agttggtcccttttgttttaaaactttcaagttagtcccttatgttttaaaactttcaagtt 28705819  T

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Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 11122271 - 11122192
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    ||||||||  ||||||||||||||||| | ||| ||  |||| |||||||||| |||||||| |||| |||||||||||||    
T  11122271 agttggtcatttatgttttaaaagtttgaagttagtatcttacgttttaaaggattcaagttcgtcc-aaacgttactcac 11122192  T

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Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 13498153 - 13498209
Alignment:
Q  211 gtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||| | |||||||||||| ||||||||||||||| ||||||| ||| ||||||    
T  13498153 gtcccttgttttttaaaggttttaagttggtccaaaaccttactcatattggaataa 13498209  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 17342924 - 17342966
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtc 242  Q
    |||||| |||||||||||||||||||||  |||||||||||||    
T  17342924 gtttcaagttggtcccttatgttttaaaaatttcaagttggtc 17342966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 2594230 - 2594283
Alignment:
Q  214 ccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||| |||||| |||| |||||  ||||||||||||||||||||| |||||    
T  2594230 ccttatggtttaaaagttttaagtttttccaaaacgttactcacattaaaataa 2594283  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 29674884 - 29674925
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggt 241  Q
    |||||| ||||||||||||| ||||||| |||||||||||||    
T  29674884 gtttcaagttggtcccttatattttaaaagtttcaagttggt 29674925  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 34829615 - 34829684
Alignment:
Q  198 aagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||| | ||||||  ||||||||||||| |||||||||| || ||| || ||||||||||| ||||||    
T  34829615 aagttttaagttggttacttatgttttaaaagtttcaagttagttcaatacattactcacattggaataa 34829684  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 11121940 - 11122023
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtccctt-atgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||| || ||||| |||||||||||||| |||||||| || |||| || || |||||||||||||  |||| ||||||||||||    
T  11121940 agttgatcccttatattttaaaagtttcaagttggtcctttaatgtctttaaagtttcaagttggtttaaaa-gttactcacatt 11122023  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 45505430 - 45505340
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  45505430 agttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattagaataa 45505340  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 4592726 - 4592636
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  4592726 agttggtctcttatgttttaaaagttttaagttggtcccttatgttttaacagtttcaagttggttcaaaacgttactcacattagaataa 4592636  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 11306624 - 11306534
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||    
T  11306624 agttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataa 11306534  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 49984160 - 49984079
Alignment:
Q  186 cttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  49984160 cttatgttttaaaagtttcaagttggtcccttatgttttaaagttttcaagttggtccaaaacgttactcacgttggaataa 49984079  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 4416518 - 4416608
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||| || |||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||| || ||||||    
T  4416518 agttgatcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 4416608  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 17524246 - 17524336
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||||| |||| || ||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||    
T  17524246 agttggtcccttatgttttaaaagtttcaagttgatctcttatgttttaaaagtttcaaattgatccaaaacgttactcacattggaataa 17524336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 20269235 - 20269145
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||||||||| ||| | || | ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||    
T  20269235 agttggtctcttatgttttaaaaatttaaagtcgttcccttacgttttaaaggtttcaagttggtccaaaacattactcacattataataa 20269145  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 4416848 - 4416758
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||| ||| | ||||||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  4416848 agttggtcccttatgttttaaaaattttaagttggtcccttacattttaaaagttttaagttggtccaaaacgttactcacattggaataa 4416758  T

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Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 18414764 - 18414854
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||||| ||||||||||||  |||||||  |||||||||||| ||||||||||||||| || ||||||    
T  18414764 agttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaaatttcaagttggttcaaaacgttactcacgttggaataa 18414854  T

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Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 20870870 - 20870959
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||| ||||||||||||| | |||||||||||| |||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  20870870 agttggtc-cttacgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataa 20870959  T

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Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 45505113 - 45505191
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||| || ||||||    
T  45505113 atgttttaaaagtttcatgttggttccttacgttttaaaagtttcaagttggtccaaaacgctactcacgttggaataa 45505191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 49983835 - 49983925
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||  ||||||||||||||||| | |||||||||||||||||||||  ||| |||||||| |||||||||||||||||| ||||||    
T  49983835 agttggtcctttatgttttaaaagtttgaagttggtcccttatgttttaaaaattttaagttggttcaaaacgttactcacatttgaataa 49983925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 18415045 - 18414977
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    ||||||||||||||||| |||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  18415045 atgttttaaaagtttcaagttggtcccttgcgttttaaaagtttcaagttggtccaaaacgttactcac 18414977  T

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Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 46397360 - 46397428
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    ||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||    
T  46397360 atgttttaaaagtttcaagttggtcccttacgttttaaaagttttaagttggtccaaaacgttactcac 46397428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 48845754 - 48845837
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    |||||| | |||||||||||||||||||| |||||||||||| ||||||||  ||| |||||||||||||| ||||||||||||    
T  48845754 agttggccccttatgttttaaaagtttcaagttggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacatt 48845837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 48846084 - 48845994
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||| | | |||| |||||||||||||| |||||||||||| | |||||||||||||| || ||||||    
T  48846084 agttggtcccttatgttttaaaagttttaagatggtgccttatgttttaaaagtttcaagttggactaaaacgttactcacgttggaataa 48845994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 2515741 - 2515821
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||||| | |||||| ||||||||||    |||||||||||| |||||||||||||||||||||||||    
T  2515741 ttatgttttaaaagtttcaagctggtcctttatgttttaccaatttcaagttggttcaaaacgttactcacattagaataa 2515821  T

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Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 43913436 - 43913524
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaat 265  Q
    |||||||| ||||| |||||||||||| |  ||||||  ||| |||||||| ||||||||||| |||||||||||||||||||||||||    
T  43913436 agttggtcccttatattttaaaagttttaaattggtcttttacgttttaaaagtttcaagttgatccaaaacgttactcacattagaat 43913524  T

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Target: chr4; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 36752913 - 36752991
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||| |||||||||||  ||||||||  |||||||||||||||||||||||| ||| || ||||||    
T  36752913 atgttttaaaagtttcaagttggtcccttgcgttttaaaaatttcaagttggtccaaaacgttacccacgttggaataa 36752991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 54702347 - 54702270
Alignment:
Q  190 tgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||| | ||||||||||||||||||||  |||| |||||| | ||||| |||||||||||||||||||    
T  54702347 tgttttaaaagttttaagttggtcccttatgttttaacagttttaagttgattcaaaatgttactcacattagaataa 54702270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 17524564 - 17524484
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||| |||||||||||||| |||| |||||||||||||||| |||| ||||||| ||||||||||||| || || ||||||    
T  17524564 ttattttttaaaagtttcaagttgatcccttatgttttaaaagttttaagttggaccaaaacgttacttacgttggaataa 17524484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 2516549 - 2516470
Alignment:
Q  188 tatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||||  ||||||||||| | ||||| ||||||| |||||||||||| ||||||||| || ||||||    
T  2516549 tatgttttaaaagtttcaaattggtcccttacgatttaatggtttcatgttggtccaaaatgttactcacgttggaataa 2516470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 37724765 - 37724705
Alignment:
Q  207 gttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||    
T  37724765 gttgatcccttaggttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 37724705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 45170698 - 45170758
Alignment:
Q  207 gttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||||||| || ||||||    
T  45170698 gttggtcccttaggttttaaaagtttcaagttggtccaaaatgttactcacgttggaataa 45170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 37724497 - 37724560
Alignment:
Q  193 tttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    ||||||||||||| ||||||||||||  |||||||  |||||| ||||||||||||||||||||    
T  37724497 tttaaaagtttcaagttggtcccttacattttaaaattttcaaattggtccaaaacgttactca 37724560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 20268937 - 20268991
Alignment:
Q  207 gttggtcccttatgtttt-aaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  20268937 gttggtcccttatgtttttaaaagtttcaagttggttcaaaacgttactcacatt 20268991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 52485712 - 52485622
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| ||||| |||||||||||| | || |||| ||||  ||||||| ||||||||| |||||||||  |||||||| |||||||||    
T  52485712 agttggtcccttatattttaaaagttttaagtgggtctcttacattttaaaagtttcaagtcggtccaaaatattactcacgttagaataa 52485622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 31141721 - 31141801
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    ||||||||  ||||||||||||  ||| | ||| ||||||||||||||||| ||||||| || ||||||||||||| ||||    
T  31141721 agttggtcatttatgttttaaattttttaagttagtcccttatgttttaaaagtttcaaattcgtccaaaacgttaatcac 31141801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 45170884 - 45170825
Alignment:
Q  208 ttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||| | |||||||||| |||| |||||||||||||||||||||||| || ||||||    
T  45170884 ttggtccttcatgttttaaaagttttaagttggtccaaaacgttactcacgttggaataa 45170825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 49984175 - 49984132
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  49984175 gtttcatgttggttccttatgttttaaaagtttcaagttggtcc 49984132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 11306629 - 11306587
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  11306629 tttcaagttggtcccttatgttttaaaagtttcaagttggtcc 11306587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 12292931 - 12292981
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaa 227  Q
    |||||||| ||| |||||||||||||||| |||||| ||||||||||||||    
T  12292931 agttggtcccttttgttttaaaagtttcaagttggtaccttatgttttaaa 12292981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 12293267 - 12293189
Alignment:
Q  178 gttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    ||||||| |||||||||||||  ||| | ||||||||  ||| ||||||| |||||| ||||||||||||| |||||||    
T  12293267 gttggtcacttatgttttaaacattttaagttggtcctatatattttaaaagtttcatgttggtccaaaacattactca 12293189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 16399276 - 16399206
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    ||||||||||||| ||| | |||||||  ||| ||||||||||||| | ||||||| ||||||||||||||    
T  16399276 ttatgttttaaaatttttaagttggtcgtttacgttttaaaggttttatgttggtcaaaaacgttactcac 16399206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 45505435 - 45505393
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  45505435 tttcaagttggtcccttatgttttaaaagtttcaagttggtcc 45505393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 48658388 - 48658323
Alignment:
Q  192 ttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||||||||||| | ||||||||||||  ||||||| |||| ||||||||| ||||||||| ||||    
T  48658388 ttttaaaagttttaagttggtcccttagattttaaaagttttaagttggtcaaaaacgttagtcac 48658323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 20871172 - 20871112
Alignment:
Q  207 gttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||| |||||||||||||  |||||||| ||||| || ||||||    
T  20871172 gttggtcctttatgttttaaaagtttcaagttggtttaaaacgttgctcacgttggaataa 20871112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 40426106 - 40426154
Alignment:
Q  216 ttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaa 264  Q
    |||||||||||| |||| ||||||||||||||| |||||||| ||||||    
T  40426106 ttatgttttaaaagttttaagttggtccaaaacattactcactttagaa 40426154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 52485384 - 52485467
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||| || |||||||||||||||||| | |||||| | ||| ||||| || |||||| ||| ||||||||| ||||| |||||    
T  52485384 agttgatcccttatgttttaaaagttttaagttggttctttacgttttcaaagtttcatgttagtccaaaacattactgacatt 52485467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 17524241 - 17524279
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttg 239  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  17524241 tttcaagttggtcccttatgttttaaaagtttcaagttg 17524279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 5665820 - 5665763
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||||| ||| ||||||||||||||||   |||||| ||||| |||||||||||||||    
T  5665820 gtttcaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcac 5665763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 31143775 - 31143734
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggt 241  Q
    ||||||||||| |||||||||||||||| |||| ||||||||    
T  31143775 gtttcatgttgatcccttatgttttaaaagttttaagttggt 31143734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 21376093 - 21376161
Alignment:
Q  179 ttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaa 247  Q
    |||||||||  ||||| |||| ||| | |||| |||||||| ||||||| ||||||||||||| |||||    
T  21376093 ttggtctctcctgtttcaaaatttttaagttgatcccttatattttaaaagtttcaagttggttcaaaa 21376161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 24672004 - 24672048
Alignment:
Q  216 ttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    |||||||||||| |||||||||||||| |||| |||| |||||||    
T  24672004 ttatgttttaaaagtttcaagttggtcaaaaatgttattcacatt 24672048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 43913758 - 43913674
Alignment:
Q  183 tctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||| |||||| | | | |||| ||| ||||| ||  ||||||||||||||||||  ||| |||| |||||||||    
T  43913758 tctcttatgttttagaagttttaagctagtcctttacgttttcaaaatttcaagttggtccaaaatattattcacgttagaataa 43913674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 3402 - 3312
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||    
T  3402 agttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataa 3312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 3407 - 3365
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  3407 tttcaagttggtcccttatgttttaaaagtttcaagttggtcc 3365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 34687806 - 34687886
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  34687806 ttatgttttaaaaatttcaagttggtcccttatgttttaaaagtttcaagttggtccaaaacgttactcactttagaataa 34687886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 9710258 - 9710340
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacat 259  Q
    |||||||| |||||||||||||||||||| ||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  9710258 agttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaagtttcaagttggtccaaaacgttactcacat 9710340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 4623120 - 4623194
Alignment:
Q  186 cttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    |||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||    
T  4623120 cttatgttttaaaagttttaagttggtctcttacgttttaaaggtttcaagttggtccaaaatgttactcacatt 4623194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 18935418 - 18935329
Alignment:
Q  178 gttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||| |||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||| ||||||||||  |||| ||||||    
T  18935418 gttggtcccttatgttttaaaagtttcaagttggtctcttgtgttttaaaagtttcaagttggtcccaaacgttactttcattggaataa 18935329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 34439582 - 34439514
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    ||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||    
T  34439582 atgttttaaaagtttcaagttggtcccttacgttttaaaagtttaaagttggtccaaaacgttactcac 34439514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 21446027 - 21446115
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||| |||||||||||||  |||||||| |||| |||||||||||||||||||| | ||||| |||||||||||||||||||    
T  21446027 agttggtcccttacgttttaaaagttt--tgttggtctcttacgttttaaaggtttcaagttgtttcaaaatgttactcacattagaataa 21446115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 18429692 - 18429614
Alignment:
Q  179 ttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    ||||||| | ||||||||||||||| | |||||||||||| |||||||| |||| ||||||||||||||||||||||||    
T  18429692 ttggtctttcatgttttaaaagtttaaagttggtcccttacgttttaaaagttttaagttggtccaaaacgttactcac 18429614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 16049531 - 16049612
Alignment:
Q  186 cttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||||||| | |||||||||||  ||||||||  |||||||||||||||||||||||| |||||| ||||||    
T  16049531 cttatgttttaaaagttttaagttggtccctttcgttttaaaaatttcaagttggtccaaaacgttacccacattggaataa 16049612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 7535624 - 7535544
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||||| | ||||||||||||||| |||| ||||||||||||  ||||| |||||| ||||||||||||||||||||||||    
T  7535624 agttggccccttatgttttaaaagattcaagttggtcccttacattttacaggttttaagttggtccaaaacgttactcac 7535544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 4623433 - 4623371
Alignment:
Q  186 cttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaac 248  Q
    |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||    
T  4623433 cttatgttttaaaagtttcaagttggtcacttatgttttaaaagtttcaagttggtcaaaaac 4623371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 7644821 - 7644911
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||||| |||| ||||||| ||||||||  ||| |||||||||| |||| ||||||| ||| ||||||    
T  7644821 agttggtcccttatgttttaaaagtttcaagttgatcccttacgttttaaaaattttaagttggtccgaaacattactcagattggaataa 7644911  T

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Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 16049848 - 16049760
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||| | |||| ||  ||| |||||||| ||||||||||||||||||| ||||||||| || ||||||    
T  16049848 agttggtcccttatgttttaaaagttttaagttgatc--ttacgttttaaaagtttcaagttggtccaaaatgttactcacgttggaataa 16049760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 7645144 - 7645074
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||| |||||||||||||| |||| |||||||  ||||||| ||||||||||| |||||||||||||||||    
T  7645144 ttatattttaaaagtttcaagttgatcccttacattttaaaagtttcaagttgatccaaaacgttactcac 7645074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 18429479 - 18429545
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||  |||||||| |||||||||    
T  18429479 tttcaagttggtcccttatattttaaaagtttcaagttggtccaaaatattactcacgttagaataa 18429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 34439278 - 34439344
Alignment:
Q  191 gttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||||||||| |||| |||||||||||| |||||||| | |||||||||||||||||||||| ||||    
T  34439278 gttttaaaagattcaagttggtcccttacgttttaaaagattcaagttggtccaaaacgttattcac 34439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 164997 - 165086
Alignment:
Q  178 gttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||||||||||||||| | ||| ||| |||||||||||||  ||| || | |||  ||||||||||||||||| ||||||    
T  164997 gttggtctcttatgttttaaaagttttaagtttgtctcttatgttttaaacattttaaatcggtataaaacgttactcacatttgaataa 165086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 18548590 - 18548659
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    ||||||||||||||||| | ||||||  |||| ||||||||||||| ||||||||||||||| |||||||    
T  18548590 ttatgttttaaaagttttaagttggtttcttacgttttaaaggttttaagttggtccaaaacattactca 18548659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 23871161 - 23871218
Alignment:
Q  198 aagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactc 255  Q
    |||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||    
T  23871161 aagtttcaagttggtccctcatattttaaaggtttcaagttggtccaaaatgttactc 23871218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 18935095 - 18935175
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||||||| ||| |||||||||| ||| | |||||||||||||||| |||| ||||||| ||||| ||||| |||||||||    
T  18935095 agttggtcccttttgttttaaaacttttaagttggtcccttatgttataaaagtttcaaattggttcaaaatgttactcac 18935175  T

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Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 25879917 - 25879849
Alignment:
Q  185 tcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttac 253  Q
    |||| ||| |||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||| |||||    
T  25879917 tcttgtgtcttaaaagtttcaagttggtcccttatattttaaaagtttcaagttggttcaaaatgttac 25879849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 18935425 - 18935383
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtc 242  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  18935425 gtttcatgttggtcccttatgttttaaaagtttcaagttggtc 18935383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 4623461 - 4623406
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtc 242  Q
    ||||||||||||||||||| | | ||| ||||||||||||| ||||||||||||||    
T  4623461 ttatgttttaaaagtttcaagatagtcacttatgttttaaaagtttcaagttggtc 4623406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 25879609 - 25879699
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||  ||||||||||||||||| |  |||||| |||| |||||||  |||||||||| || ||||||||||| ||| || ||||||    
T  25879609 agttggtccattatgttttaaaagttttaaattggtcacttacgttttaatagtttcaagttagttcaaaacgttacccacgttggaataa 25879699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 18935390 - 18935352
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtccc 215  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  18935390 agttggtctcttgtgttttaaaagtttcaagttggtccc 18935352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 32665902 - 32665840
Alignment:
Q  193 tttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactc 255  Q
    ||||||||||| |  |||| ||||||||||||||  |||| ||||||||||||||| ||||||    
T  32665902 tttaaaagttttaaattggacccttatgttttaagagttttaagttggtccaaaactttactc 32665840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 34687825 - 34687862
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcc 214  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  34687825 agttggtcccttatgttttaaaagtttcaagttggtcc 34687862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 164988 - 165028
Alignment:
Q  198 aagtttcatgttggtcccttatgttttaaaggtttcaagtt 238  Q
    |||||||||||||||| ||||||||||||| |||| |||||    
T  164988 aagtttcatgttggtctcttatgttttaaaagttttaagtt 165028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 4623413 - 4623377
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtc 213  Q
    |||||||| |||||||||||||||||||| |||||||    
T  4623413 agttggtcacttatgttttaaaagtttcaagttggtc 4623377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 31872959 - 31872880
Alignment:
Q  188 tatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||    
T  31872959 tatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 31872880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 8718567 - 8718477
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| ||||| |||||||||||||| ||| |||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||    
T  8718567 agttggtcccttattttttaaaagtttcaagtttgtcccttatgttttaaaattttcaagttggttcaaaacgttactcacattggaataa 8718477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 22792648 - 22792558
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||| ||||||||||||| | |||||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  22792648 agttggtcccttaagttttaaaagttttaagttggtcccttacgtttgaaaggtttcaagttagtccaaaacgttactcacattggaataa 22792558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 35795687 - 35795597
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| || ||||||||||||||| |  |||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  35795687 agttggtccctgatgttttaaaagttttaaattggtcccttatgttttaaaagtttcaagttggttcaaaacgttactcacataagaataa 35795597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 48171807 - 48171717
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||  ||||||||||||||||||| | || |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  48171807 agttggtcctttatgttttaaaagtttcaagctgttcccttatgttttaaaagtttcaagttggttcaaaacgttactcacatttgaataa 48171717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 3075281 - 3075201
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||||| |||||||| ||| |||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  3075281 ttatgttttaaaagtttcaagttggtccattacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataa 3075201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 19987386 - 19987466
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||| | |||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  19987386 ttatgttttaaaagttttaagttggtcccttaagttttaaaagtttcaagttgatccaaaacgttactcacattggaataa 19987466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 37245679 - 37245769
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||| |||||||||||||| |||| |||||||  ||||||| |||| |||||||||||||||||||||||| || ||||||    
T  37245679 agttggtctcttatattttaaaagtttcaagttgatcccttacattttaaaagttttaagttggtccaaaacgttactcacgttggaataa 37245769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 33459937 - 33460027
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||| ||| |||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| ||||| ||| ||| |||||    
T  33459937 agttagtcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagtttcaagttggtccaaaatgttacgcacgttataataa 33460027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 34518325 - 34518235
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||  |||| |||||||||||| |  ||||||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||    
T  34518325 agttggtcctttatattttaaaagttttaaattggtcccttacgttttaaaaatttcaagttggtccaaaacgttactcacgttagaataa 34518235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 35795355 - 35795445
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||  ||||||||||||||  |||||||||||| ||||||||||||||||| |||||||||||||||| ||| || ||||||    
T  35795355 agttggtcccttgagttttaaaagtttcgagttggtcccttacgttttaaaggtttcaaggtggtccaaaacgttacccacgtttgaataa 35795445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 42605000 - 42604910
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||| | |||| ||||||||||||||| |||||||||||| ||||| || |||||| ||||||| ||||||||||||||||| ||||||    
T  42605000 agttggacccttaggttttaaaagtttcaagttggtcccttacgtttttaaagtttcatgttggtcaaaaacgttactcacatttgaataa 42604910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 143173 - 143104
Alignment:
Q  188 tatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||| ||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  143173 tatgctttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcac 143104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 14420145 - 14420060
Alignment:
Q  182 gtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||| ||||||||||||||||||| |||  ||  ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  14420145 gtctattatgttttaaaagtttcaagttaatcaattatgttttaaagatttcaagttggtccaaaacgttactcacgttggaataa 14420060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 42604682 - 42604762
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||| |||||||||||||| |||||||||||  |||||||| |||||||||||||| |||||||||||||| || ||||||    
T  42604682 ttatattttaaaagtttcaagttggtccctttagttttaaaagtttcaagttggtctaaaacgttactcacgttggaataa 42604762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 31872751 - 31872804
Alignment:
Q  207 gttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  31872751 gttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacatt 31872804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 142853 - 142936
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    |||||||| ||| |||||||||| ||||| ||||||||||||||||||||| ||||||| || ||  ||||||||||| |||||    
T  142853 agttggtcccttgtgttttaaaattttcaagttggtcccttatgttttaaaagtttcaaatttgtttaaaacgttacttacatt 142936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 22792332 - 22792411
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    |||||||| ||| |||||||||||||| | |||||||| |||||||||||| |||||| |||| | ||||||||||||||    
T  22792332 agttggtcccttttgttttaaaagttttaagttggtccgttatgttttaaaagtttcatgttgattcaaaacgttactca 22792411  T

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Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 3073020 - 3073110
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| ||| |||||||||||||| | ||||||| |||| |||||||| |||||||||||||| |||| |||| |||| || ||||||    
T  3073020 agttggtcccttgtgttttaaaagttttaagttggtctcttacgttttaaaagtttcaagttggtctaaaatgttattcacgttggaataa 3073110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 33460256 - 33460171
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||||| |||| ||||||| |||||||| |||     ||||||||||||||||||||| || ||||||    
T  33460256 agttggtcccttatgttttaaaagtttcaagttgatcccttacgttttaaaagtt-----ttggtccaaaacgttactcacgttggaataa 33460171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 18519359 - 18519439
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||||||| ||||||||||||| |||| | |||||||||||| ||||||||  |||||||||| |  ||||||||||||||    
T  18519359 agttggtcccttatgttttaaatgttttaagttggtcccttacgttttaaaaatttcaagttgatataaaacgttactcac 18519439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 34518006 - 34518089
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||||||  ||||||||||| |||||||  | |||||| || |||||||| |||| |||||||| ||||||||||||||||||    
T  34518006 agttggtccattatgttttaacagtttcaactcggtcccctacgttttaaaagttttaagttggttcaaaacgttactcacatt 34518089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 25622659 - 25622711
Alignment:
Q  215 cttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||| || ||||||||||||| |||||||||||||||||| ||||||    
T  25622659 cttatgttttgaaagtttcaagttggttcaaaacgttactcacattggaataa 25622711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 19987704 - 19987621
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    |||||||  ||| |||||||||||||| || ||||||||| |  ||||||| |||| |||||| |||||||||||||| |||||    
T  19987704 agttggttccttgtgttttaaaagttttattttggtccctcacattttaaaagttttaagttgatccaaaacgttacttacatt 19987621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 48171478 - 48171521
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  48171478 gtttcaggttggtcccttatgttttaaaagtttcaagttggtcc 48171521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 13189195 - 13189273
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactc 255  Q
    |||||||| ||||| |||||||||||| | |||||| | |||| ||||||| || || ||||||| |||||||||||||    
T  13189195 agttggtcccttatattttaaaagttttaagttggtgctttatattttaaaagtatcgagttggttcaaaacgttactc 13189273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 48171485 - 48171531
Alignment:
Q  178 gttggtctcttatgttttaaaagtttcatgttggtcccttatgtttt 224  Q
    ||||||| |||||||||||||||||||| |||||||||||| |||||    
T  48171485 gttggtcccttatgttttaaaagtttcaagttggtcccttacgtttt 48171531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 18519665 - 18519599
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||| ||||||| | || |||||||| ||||||||||| || |||||||||||||| || ||||||    
T  18519665 tttcaagttggtctcatacgttttaaaagtttcaagttgatctaaaacgttactcacgttggaataa 18519599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 33459932 - 33459974
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||    
T  33459932 tttcaagttagtcccttatgttttaaaagtttcaagttggtcc 33459974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 33460261 - 33460223
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttg 239  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  33460261 tttcaagttggtcccttatgttttaaaagtttcaagttg 33460223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 19540866 - 19540956
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||| |||||||||| |||||||||||  |||| || ||||| |||||||||||||||||||||||||    
T  19540866 agttggtcccttatgttttaaaagttttatgttggtcctttatgttttaacagttttaaattggttcaaaacgttactcacattagaataa 19540956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 33419591 - 33419665
Alignment:
Q  186 cttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||| |||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  33419591 cttatcttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacatt 33419665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 54341257 - 54341335
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||    
T  54341257 atgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 54341335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 33419912 - 33419822
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||||||||| | |||||||||| |||||||| |||| ||||||| | |||||||||||||| || ||||||    
T  33419912 agttggtcccttatgttttaaaagtttcaagatggtcccttacgttttaaaagttttaagttggactaaaacgttactcacgttggaataa 33419822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 48618532 - 48618612
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||| |  ||||| |||||||||||||   |||||||||||| |||||||||||||||||||||||||    
T  48618532 ttatgttttaaaagttttaaattggttccttatgttttaacaatttcaagttggttcaaaacgttactcacattagaataa 48618612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 51388129 - 51388049
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    ||||||||||||||||||||||||||| | |||| |||||||  ||||||| |||| || |||||||||||||||||||||    
T  51388129 agttggtctcttatgttttaaaagttttaagttgatcccttacattttaaaagttttaaattggtccaaaacgttactcac 51388049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 7015394 - 7015469
Alignment:
Q  192 ttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||| | |||||||||||| |||||||| ||||| | |||||||||||| ||||||||| ||||||||    
T  7015394 ttttaaaagttttaagttggtcccttaagttttaaaagtttcgatttggtccaaaacattactcacactagaataa 7015469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 33241888 - 33241971
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||| || |||||||||||||||||| |  ||||| |||||| ||||||| ||||||| |||||||||||||||| |||||||    
T  33241888 agttgttcccttatgttttaaaagttttaatttggttccttatattttaaaagtttcaaattggtccaaaacgttagtcacatt 33241971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 37285918 - 37285835
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    |||||||| ||||| |||||||||||||| ||||  || |||| |||||||  |||||||||||| ||||||||||||||||||    
T  37285918 agttggtcccttatattttaaaagtttcaagttgaccctttatattttaaaaatttcaagttggttcaaaacgttactcacatt 37285835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 30547781 - 30547846
Alignment:
Q  178 gttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    ||||||| |||||||||||||||||| | ||||||||||||  |||||||||||| ||||||||||    
T  30547781 gttggtcgcttatgttttaaaagttttaagttggtcccttactttttaaaggttttaagttggtcc 30547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 37285604 - 37285680
Alignment:
Q  191 gttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||| |||  ||||||| |||||||||||||||||||||||  |||||||| |||| ||| |||||    
T  37285604 gttttaaaagtttcaagttaatcccttacgttttaaaggtttcaagttggtctcaaacgttattcacgttaaaataa 37285680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 40484999 - 40484929
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaac 248  Q
    |||||||| ||||||||| ||||||||||  ||||||  ||||||||||||||||||||||||| |||||||    
T  40484999 agttggtcccttatgttt-aaaagtttcaaattggtcatttatgttttaaaggtttcaagttggaccaaaac 40484929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 30548104 - 30548023
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcat--gttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    |||||||| | ||| ||||||||||||||   |||| || |||| |||||||| ||||||||||||||||||||||||||||    
T  30548104 agttggtcccatatcttttaaaagtttcaaaagttgatctcttacgttttaaaagtttcaagttggtccaaaacgttactca 30548023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 48618852 - 48618781
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaac 248  Q
    |||||||||||||||||| |||  ||| | ||||||| |||| ||||||||| ||| ||||| |||||||||    
T  48618852 agttggtctcttatgtttgaaacattttaagttggtctcttaagttttaaagttttaaagtttgtccaaaac 48618781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 29526964 - 29526874
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||  ||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||    
T  29526964 agttggtccattatgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 29526874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 15988611 - 15988530
Alignment:
Q  186 cttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||| ||||||    
T  15988611 cttatgttttaaaagtttcaagttggtcccttatattttaaaagttttaagttggtccaaaacattactcacattggaataa 15988530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 3221196 - 3221118
Alignment:
Q  178 gttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||||||  ||||||||||||| |||||||||||||    
T  3221196 gttggtcccttatgttttaaaagtttcaagttggtccattatgttttaaaattttcaagttggtctaaaacgttactca 3221118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 3217328 - 3217417
Alignment:
Q  178 gttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||| ||||||||||||| |||||| |||||||| ||||||||||||  ||||||||||||| |||||||||||||| || ||||||    
T  3217328 gttggtcccttatgttttaaaggtttcaagttggtccattatgttttaaaattttcaagttggtctaaaacgttactcacgttggaataa 3217417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 26845552 - 26845464
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatg-ttttaaaggtttcaagttggtccaaaacgttactcacattagaa 264  Q
    |||||||| |||||||||||||||||||| |||||||| ||||| ||||||  |||||| |||||| ||||||||||||||||||||||    
T  26845552 agttggtcccttatgttttaaaagtttcaagttggtcctttatgtttttaacagtttcatgttggttcaaaacgttactcacattagaa 26845464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 44995415 - 44995340
Alignment:
Q  192 ttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||| |||||||||||| |||||||| || |||||||||||||||||||||||||| || ||||||    
T  44995415 ttttaaaagtttcaagttggtcccttacgttttaaaagtatcaagttggtccaaaacgttactcacgttggaataa 44995340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 13140332 - 13140400
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaa 245  Q
    ||||||||| ||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||    
T  13140332 agttggtcttttatgttttaaaagttttaagttggtcacttacgttttaaaggtttcaagttggtccaa 13140400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 13490226 - 13490306
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||| | ||||||| |||| |||||||| |||| |||||||||||||||||||||||| || ||||||    
T  13490226 ttatgttttaaaagttttaagttggtctcttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataa 13490306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 3217321 - 3217365
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtcca 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3217321 gtttcatgttggtcccttatgttttaaaggtttcaagttggtcca 3217365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 13490537 - 13490454
Alignment:
Q  183 tctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||||||| || | |||||||||||| | |||||| ||||||||||||||| ||| |||||||||||| ||||||    
T  13490537 tctcttatgttttaaaagatttaagttggtcccttacgctttaaaagtttcaagttggtcc-aaatgttactcacattggaataa 13490454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 27957087 - 27957012
Alignment:
Q  181 ggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    |||||||||| |||||||||||| |  ||||||| ||| | |||||| ||||||||||||||||||||||||||||    
T  27957087 ggtctcttatattttaaaagttttaacttggtccgttacgctttaaatgtttcaagttggtccaaaacgttactca 27957012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 29526640 - 29526714
Alignment:
Q  179 ttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttact 254  Q
    |||||| ||||||||| ||| |||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  29526640 ttggtcccttatgtttgaaa-gtttcaagttggtctcttacgttttaaaagtttcaagttggtccaaaacgttact 29526714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 6795542 - 6795452
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||  ||||||||||||||||| | |||||||||| | |||||||| |||| |||||||| ||||| |||||| |||||| |||||    
T  6795542 agttggtccattatgttttaaaagtttaaagttggtccctaacgttttaaaagtttaaagttggttcaaaatgttactaacattataataa 6795452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 27956779 - 27956857
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||| |  ||||||||||| |||||||| |||||||||||||||||||| |||| ||| || ||||||    
T  27956779 atgttttaaaagttttaaattggtcccttacgttttaaaagtttcaagttggtccaaaacattacccacgttggaataa 27956857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 1353172 - 1353112
Alignment:
Q  207 gttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||| ||||||||||||| ||||||||||||||||||| ||||||||  |||||||||    
T  1353172 gttggtctcttatgttttaaaagtttcaagttggtccaaaatgttactcatcttagaataa 1353112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 15988046 - 15988113
Alignment:
Q  199 agtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||| | ||||||||||| ||||||    
T  15988046 agtttcaagttggtcccttatgttttaaa-gttccaagttggtccaaatcattactcacattggaataa 15988113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 3221202 - 3221159
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttggtcca 244  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  3221202 tttcatgttggtcccttatgttttaaaagtttcaagttggtcca 3221159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 14473896 - 14473821
Alignment:
Q  181 ggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    |||| |||||||||||||||||| | ||||||  ||| |||||| |  ||||||||||||||||||||||||||||    
T  14473896 ggtcccttatgttttaaaagttttaagttggtgtcttttgttttgagagtttcaagttggtccaaaacgttactca 14473821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 43971884 - 43971797
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaa 264  Q
    |||||||| | | |||||||||||||||| ||||||||||  ||||||||| |||||| |||||| ||||  ||||||||| ||||||    
T  43971884 agttggtcacatgtgttttaaaagtttcaagttggtccctagtgttttaaaagtttcatgttggttcaaattgttactcacgttagaa 43971797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 24065917 - 24066007
Alignment:
Q  179 ttggtctcttatgttttaaaagtttcatgttggtccctt-atgttttaaaggtttcaagttggtccaaaacgttactcacattagaataat 268  Q
    |||||| |||||||||||||||||||| | | |||| || |||||||||| |||||||||||||| ||||| |||||| || | |||||||    
T  24065917 ttggtcccttatgttttaaaagtttcaagcttgtccttttatgttttaaaagtttcaagttggtctaaaacattactcccagttgaataat 24066007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 32622547 - 32622469
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||| | |||||||  ||| || ||||| |||| |||||||||||||||||||||||| || ||||||    
T  32622547 atgttttaaaagtttgaagttggtcttttacgtattaaaagttttaagttggtccaaaacgttactcacgttggaataa 32622469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 38262896 - 38262812
Alignment:
Q  183 tctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||| ||||||||||  || ||| ||||| ||||||| |||| ||||| |||  ||||||||||| |||||||||||    
T  38262896 tctcttatgtttcaaaagtttcaaattagtctcttatattttaaaagttttaagtttgtctcaaacgttactcccattagaataa 38262812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 43513929 - 43513849
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||||||||||||||| || ||||||| | |||| ||||||| ||||||| | |||||||||||| ||||| |||| ||||    
T  43513929 agttggtctcttatgtcttgaaagtttaaagttgatcccttacgttttaatgttttcaagttggttcaaaatgttattcac 43513849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 24015853 - 24015936
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||| || |||||||||||||||||| | |||||||| ||| ||||| ||  ||||| ||||||||||||| ||||| |||||    
T  24015853 agttgatcccttatgttttaaaagttttaagttggtcctttacgttttgaaaatttcatgttggtccaaaacattactgacatt 24015936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 32622255 - 32622321
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||| ||||||| ||||||||||||| ||||| ||||| |||||||||||||  || |||||||||    
T  32622255 tttcaagttggtctcttatgttttaaaagtttccagttgatccaaaacgttacctacgttagaataa 32622321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 1353173 - 1353136
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcc 214  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1353173 agttggtctcttatgttttaaaagtttcaagttggtcc 1353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 24284168 - 24284091
Alignment:
Q  179 ttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    |||||| |||||||||||||||||| | ||| | | ||||| ||||||| |||||||||||  ||||||| |||||||    
T  24284168 ttggtcccttatgttttaaaagttttaagtttgactcttatattttaaaagtttcaagttgacccaaaacattactca 24284091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 13140632 - 13140572
Alignment:
Q  207 gttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||  |||| ||||||| ||||||||||||| ||| ||||||||||||||| |||||    
T  13140632 gttggtcatttatattttaaaagtttcaagttggttcaatacgttactcacattataataa 13140572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 14473549 - 14473609
Alignment:
Q  207 gttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||||||| |||| ||||| |||||||| |||| ||| ||| ||||||    
T  14473549 gttggtcccttatgttttaaaagttttaagtttgtccaaaatgttaatcatattggaataa 14473609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 6412522 - 6412577
Alignment:
Q  193 tttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaac 248  Q
    ||||||||||| |  |||| ||||||||||||||  ||||||||||||||||||||    
T  6412522 tttaaaagttttaaattggacccttatgttttaagagtttcaagttggtccaaaac 6412577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 13525333 - 13525266
Alignment:
Q  193 tttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||||||||| | ||| ||| |||||||||||||   |||||||||||| ||||||||| |||||||    
T  13525333 tttaaaagttttaagtttgtctcttatgttttaaaaaattcaagttggtctaaaacgttattcacatt 13525266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 15988625 - 15988583
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtcc 243  Q
    ||||||||||||||| |||||||||||| |||||||||||||||    
T  15988625 gtttcatgttggtcc-ttatgttttaaaagtttcaagttggtcc 15988583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 29526666 - 29526703
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcc 214  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  29526666 agttggtctcttacgttttaaaagtttcaagttggtcc 29526703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 37762372 - 37762315
Alignment:
Q  182 gtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttg 239  Q
    |||||||||||||||||| ||| |  ||| |||||||  |||||||||||||||||||    
T  37762372 gtctcttatgttttaaaatttttaaattgatcccttacattttaaaggtttcaagttg 37762315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 34065363 - 34065280
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||| ||||||||  |||||||||||||||||    
T  34065363 agttggtctcttatgttttaaaagttttaagttggtcccttatattttaaaagtttaaagttggttaaaaacgttactcacatt 34065280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 16642792 - 16642882
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| |||||||||||||  ||||| ||||||| |||  ||||||||||||||||||||||| |||||||||| ||| || ||||||    
T  16642792 agttggtcccttatgttttaaatatttcaagttggtctcttgcgttttaaaggtttcaagttggtctaaaacgttacgcacgttggaataa 16642882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 33992377 - 33992457
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||| ||| ||||||||||| |||||| |  ||||||||||| |||||||| ||||||||||||| |||||||||| ||||    
T  33992377 agttcgtcccttatgttttataagttttaaattggtcccttacgttttaaaagtttcaagttggttcaaaacgttattcac 33992457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 25508175 - 25508092
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||| || |||||||||||||||||||| ||| |||| |||| ||||    |||| |||||||||||||||||||||||||||    
T  25508175 agttgctcccttatgttttaaaagtttcaagttcgtcctttatatttttttagttttaagttggtccaaaacgttactcacatt 25508092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 19935476 - 19935552
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttact 254  Q
    ||||||||  |||||||||| || ||||| |||||||||| |||||||||| ||| |||||||||||||||| |||||    
T  19935476 agttggtccattatgttttataaatttcaagttggtccctgatgttttaaaagtt-caagttggtccaaaacattact 19935552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 33992696 - 33992627
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactca 256  Q
    ||||||||||||||||| |  ||||| ||||| |||||||| |||| || ||||| ||||||||||||||    
T  33992696 ttatgttttaaaagttttaaattggttccttacgttttaaaagttttaaattggttcaaaacgttactca 33992627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 32291156 - 32291075
Alignment:
Q  186 cttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||| ||| | ||| ||| |||| ||||||||||||| |||||| |  |||| ||||||||| ||| |||||    
T  32291156 cttatgttttaaaaatttaaagttagtctcttacgttttaaaggttttaagttgatttaaaaggttactcactttaaaataa 32291075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 62768 - 62858
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||| |||||||||||||||||| |||  ||||||| |||||||| |||| |||||||||||||||||||||||| || ||||||    
T  62768 agttggtctcgtatgttttaaaagtttcaagttaatcccttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataa 62858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 63082 - 63004
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||| ||||||||||||  ||||||| |||||| |||||||||||||||||||||| || ||||||    
T  63082 atgttttaaaagtttcaagttggtcccttacattttaaaagtttcaggttggtccaaaacgttactcactttggaataa 63004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 22566347 - 22566423
Alignment:
Q  179 ttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||||| |||||||||||||||||||| |||||||||||| |||||||| |||||  ||||||||||||||||||||||    
T  22566347 ttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttc--gttggtccaaaacgttactcac 22566423  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 34535746 - 34535823
Alignment:
Q  190 tgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||||| | |||||||||| |||||||| |||| ||||||||||||||||||||||| ||| ||||||    
T  34535746 tgttttaaaagtttcaagctggtcccttacgttttaaaagttttaagttggtccaaaacgttactcatattggaataa 34535823  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 36469892 - 36469815
Alignment:
Q  190 tgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||| ||||||||| || ||||||    
T  36469892 tgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaatgttactcacgttggaataa 36469815  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 6376418 - 6376498
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||| | |||||||||||| |||||||| ||||||||||| | ||||||||| |||||||| ||||||    
T  6376418 ttatgttttaaaagttttaagttggtcccttaggttttaaaagtttcaagttgattcaaaacgtttctcacatttgaataa 6376498  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 48462163 - 48462087
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttac 253  Q
    |||||||| |||||||||||||||||||| |||||||  |||||||||||| |||| |||||| |||||||||||||    
T  48462163 agttggtcccttatgttttaaaagtttcaagttggtcatttatgttttaaaagttttaagttgatccaaaacgttac 48462087  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 48461844 - 48461924
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||||||||||| | ||||||| |||| |||||||| || | |||||| ||||||||||||||||| |||||||||    
T  48461844 ttatgttttaaaagttttaagttggtctcttacgttttaaaagtatgaagttgatccaaaacgttactcacgttagaataa 48461924  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 7460613 - 7460684
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaac 248  Q
    ||||| || |||||||||||||| ||||| |||||||||||| ||||||||  |||||||||||||||||||    
T  7460613 agttgatcccttatgttttaaaaatttcaagttggtcccttacgttttaaaaatttcaagttggtccaaaac 7460684  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 8560680 - 8560754
Alignment:
Q  186 cttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||| |||||||||||| | ||||||||| ||  ||||||| |||||| |||||||||||||||||||||||||    
T  8560680 cttatattttaaaagttttaagttggtcccctacattttaaaagtttcatgttggtccaaaacgttactcacatt 8560754  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 24185711 - 24185779
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaa 246  Q
    ||||||||  ||||||||||||||||| |  |||||| ||||||||||||||||||||||||||||||||    
T  24185711 agttggtcctttatgttttaaaagttttaa-ttggtcacttatgttttaaaggtttcaagttggtccaaa 24185779  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 43510932 - 43511003
Alignment:
Q  187 ttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacat 259  Q
    ||||||||||||||||||| |||| | | |||| ||||||| |||||||||||||||||||||||| ||||||    
T  43510932 ttatgttttaaaagtttcaagttgattc-ttatattttaaatgtttcaagttggtccaaaacgttaatcacat 43511003  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 7460917 - 7460851
Alignment:
Q  201 tttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||| ||||||| ||||||||||||| ||||||| |||||| |||||||||||||| || ||||||    
T  7460917 tttcaagttggtcacttatgttttaaaagtttcaaattggtctaaaacgttactcacgttggaataa 7460851  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 34536054 - 34535964
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||| ||||  |||||||||||| | ||||||| |||| |||||| | ||||||||||| || |||||||||||||| || ||||||    
T  34536054 agttggtcccttacattttaaaagttttaagttggtctcttacgttttagaagtttcaagttgatcaaaaacgttactcacgttggaataa 34535964  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 24188246 - 24188189
Alignment:
Q  200 gtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcac 257  Q
    |||||| ||||||||||||||||||||  ||||||||||||| ||||| |||||||||    
T  24188246 gtttcaagttggtcccttatgttttaagagtttcaagttggttcaaaatgttactcac 24188189  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 6376730 - 6376640
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    ||||||||  |||||||||||||| || | ||||||  |||| ||||||||| ||| ||||| ||||||||||||| |||| ||| |||||    
T  6376730 agttggtcatttatgttttaaaagctttaggttggtatcttacgttttaaagtttttaagttagtccaaaacgttattcacgttaaaataa 6376640  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 10017964 - 10017894
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaa 247  Q
    |||||||||||||||||||||||||||   ||| |||  || ||||||||| |||||||||| ||| ||||    
T  10017964 agttggtctcttatgttttaaaagttttcagttcgtctattttgttttaaaagtttcaagttagtctaaaa 10017894  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 10017671 - 10017724
Alignment:
Q  214 ccttatgttttaaaggtttcaagttggtccaaaacgttactcacattagaataa 267  Q
    |||||||||||||| |||| ||||| |||||||| ||||||||  |||||||||    
T  10017671 ccttatgttttaaaagttttaagttagtccaaaatgttactcaatttagaataa 10017724  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 17814018 - 17814046
Alignment:
Q  177 agttggtctcttatgttttaaaagtttca 205  Q
    |||||||||||||||||||||||||||||    
T  17814018 agttggtctcttatgttttaaaagtttca 17814046  T

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Target: scaffold0400 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 9943 - 9860
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||||||||||||||||||||||||||| | || |  |||| |||||||| |||| || ||||| ||||| ||||||| ||||    
T  9943 agttggtctcttatgttttaaaagtttcaagatgattgcttacgttttaaaagttttaatttggtacaaaatgttactcgcatt 9860  T

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Target: scaffold0400; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 9624 - 9669
Alignment:
Q  180 tggtctcttatgttttaaaagtttcatgttggtcccttatgtttta 225  Q
    ||||| ||||||||||||||||||||  ||||||||||| ||||||    
T  9624 tggtcccttatgttttaaaagtttcaaattggtcccttacgtttta 9669  T

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Target: scaffold0365 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 10586 - 10503
Alignment:
Q  177 agttggtctcttatgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttactcacatt 260  Q
    ||||||||||||||||||||||||||||| | || |  |||| |||||||| |||| || ||||| ||||| ||||||| ||||    
T  10586 agttggtctcttatgttttaaaagtttcaagatgattgcttacgttttaaaagttttaatttggtacaaaatgttactcgcatt 10503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 10267 - 10312
Alignment:
Q  180 tggtctcttatgttttaaaagtttcatgttggtcccttatgtttta 225  Q
    ||||| ||||||||||||||||||||  ||||||||||| ||||||    
T  10267 tggtcccttatgttttaaaagtttcaaattggtcccttacgtttta 10312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 23984 - 23919
Alignment:
Q  189 atgttttaaaagtttcatgttggtcccttatgttttaaaggtttcaagttggtccaaaacgttact 254  Q
    ||||||||||||||| | |||  || ||||| ||||||||||||  | ||||||||||||||||||    
T  23984 atgttttaaaagttttaagttattctcttatattttaaaggttttgaattggtccaaaacgttact 23919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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