View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_16 (Length: 270)
Name: NF16046_low_16
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 45922943 - 45922704
Alignment:
| Q |
13 |
aaaataaataaacaataacctgcattcctcctccttgcttagtgaagagttcgaaatggctgagcatccattttgttctgcaatgtaagttttcatttcg |
112 |
Q |
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| T |
45922943 |
aaaaaaaaaaaacaataacttgcattcctcctccttgcttagcgaagagttcgaaatggctgagcatccactttgttctgcaatgtaagttttcatttcg |
45922844 |
T |
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| Q |
113 |
tttcatcctctagaccagacgcggcaaatcatacatcatgcatattgtatgtttggaattctaagttctagggtgaaccaccttgataagttgatatgta |
212 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45922843 |
tttcatcctctagaccagaagcggcaaatcatacatcatgcatattgtatgtttggtattctaagttctagggtgaaccaccttgataagttgatatgta |
45922744 |
T |
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| Q |
213 |
atgactaacgcnnnnnnnggttgatgaaaaatgctatatc |
252 |
Q |
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|||||||| || |||||||||||||||||||||| |
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| T |
45922743 |
atgactaatgctttttttggttgatgaaaaatgctatatc |
45922704 |
T |
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