View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_19 (Length: 251)
Name: NF16046_low_19
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 31049966 - 31050200
Alignment:
| Q |
3 |
accttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttcgatataaagtttttggctgtgaca |
102 |
Q |
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| T |
31049966 |
accttgagtatatatggctgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttcgatatgaagtttttggctgtgaca |
31050065 |
T |
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| Q |
103 |
ttcttattttacttaccgactttattgtatccctgcaaaataaatttttattttgtcacgtatttttaaaagcttgtcatcacaagggtatacataattt |
202 |
Q |
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| T |
31050066 |
ttctaattttaattaccgactttattgtatccctgcaaaataaatttttattttgtcacgtatttttaaaagcttgtcatcacaagggtatacataattt |
31050165 |
T |
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| Q |
203 |
cactaatagttaataattacgtggtacttatgcct |
237 |
Q |
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| T |
31050166 |
cactaatagttaataattacgtggtacttatgcct |
31050200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 31162862 - 31162937
Alignment:
| Q |
3 |
accttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc |
78 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31162862 |
accttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggctttcttc |
31162937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 31062452 - 31062527
Alignment:
| Q |
3 |
accttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc |
78 |
Q |
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| T |
31062452 |
accttgagtatatatggttgaacttgatttggacctctagatgagaatgaagccataactggagctggctttcttc |
31062527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 31145038 - 31145113
Alignment:
| Q |
3 |
accttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc |
78 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31145038 |
accttgagtatatatggttgaactttatttggtcctctagatgagaatgaagccataactggagctggctttcttc |
31145113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 31107458 - 31107568
Alignment:
| Q |
3 |
accttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttcgatataaagtttttggctgtgaca |
102 |
Q |
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||||||||||| |||||||||||| ||||||||||||||| ||| | |||||||||||||||||||| ||||||| || |||||||||| |||||| |
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| T |
31107458 |
accttgagtattgatggttgaactttatttggtcctctagaagagtaggaagccataactggagctggctttcttctattcaaagtttttgctggtgaca |
31107557 |
T |
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| Q |
103 |
ttcttatttta |
113 |
Q |
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|||||| |||| |
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| T |
31107558 |
ttcttagttta |
31107568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 31202772 - 31202697
Alignment:
| Q |
3 |
accttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc |
78 |
Q |
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||||||||||| |||| |||| || |||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
31202772 |
accttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccattactggagctggctttcttc |
31202697 |
T |
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