View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_20 (Length: 247)
Name: NF16046_low_20
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31049964 - 31049728
Alignment:
| Q |
1 |
tttatactacacttgaatttgttagttactatgcaataatcctcattaatttttgttgatatattaaggagattg------ttttttgtttcagcctgat |
94 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31049964 |
tttatactacacttgaatttgttagttactatctaataatcctcattaatttttgttgatatattaaggagattgcttttgttttttgtttcagcctgat |
31049865 |
T |
|
| Q |
95 |
gtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgtcgaggttttccattcaatatac |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31049864 |
gtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgtcgaggttttccattcaatatac |
31049765 |
T |
|
| Q |
195 |
aacaaggaacttctatgtcttgtcctcatgttgctgg |
231 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31049764 |
aacaaggaacttctatgtcttgtcctcatgttgctgg |
31049728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31162860 - 31162624
Alignment:
| Q |
1 |
tttatactacacttgaatttgttagttactatgcaataatcctcattaatttttgttgatatattaaggagattg------ttttttgtttcagcctgat |
94 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31162860 |
tttatactacacttgaatttgttagttactatctaataatcctcattaatttttgttgatatattaaggagattgcttttgttttttgtttcagcctgat |
31162761 |
T |
|
| Q |
95 |
gtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgtcgaggttttccattcaatatac |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31162760 |
gtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgtgtctaatttagtaacagacaatcgtcgaggttttccattcaatatac |
31162661 |
T |
|
| Q |
195 |
aacaaggaacttctatgtcttgtcctcatgttgctgg |
231 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31162660 |
aacaaggaacttctatgtcttgtcctcatgttgctgg |
31162624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31145036 - 31144804
Alignment:
| Q |
1 |
tttatactacacttgaatttgttagttactatgcaataatcctcattaatttttgttgatatattaaggagattg------ttttttgtttcagcctgat |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
31145036 |
tttatactacacttgaatttgttagttactatctaataatcctcattaatttttgttgatatgttaaggagattgcttttgttttttgtttcagcctgat |
31144937 |
T |
|
| Q |
95 |
gtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgtcgaggttttccattcaatatac |
194 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31144936 |
gtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgtgtctaatttagtaacagacaatcgtcgaggttttccattcaatatac |
31144837 |
T |
|
| Q |
195 |
aacaaggaacttctatgtcttgtcctcatgttg |
227 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
31144836 |
aacaaggaacttctatgtcttgtcctcatgttg |
31144804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 31062209 - 31062051
Alignment:
| Q |
73 |
ttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |
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| T |
31062209 |
ttgttttttgtttcagcctgatgtaactgcacctggtgtgaacatacttgctgcctattcattgtttgctagtgcatctaatttactaacagacaatcgc |
31062110 |
T |
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| Q |
173 |
cgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctgg |
231 |
Q |
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| T |
31062109 |
cgaggttttcccttcaatgtaatgcaaggaacttctatgtcttgccctcatgttgctgg |
31062051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 31107377 - 31107225
Alignment:
| Q |
76 |
ttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgtcga |
175 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |
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| T |
31107377 |
tttttcgtttcagcctgatgtaactgcgccaggtgtgaacatactcgctgcctattcattgtttgcaagtgcatctaatttaataacagacactcgtcga |
31107278 |
T |
|
| Q |
176 |
ggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgc |
228 |
Q |
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||||||||||||||| || ||||||||||||||||||||||| |||||||| |
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| T |
31107277 |
ggttttccattcaatgtaatgcaaggaacttctatgtcttgtccacatgttgc |
31107225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 31202855 - 31203010
Alignment:
| Q |
73 |
ttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||| |
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| T |
31202855 |
ttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaaaaacagacaatcgc |
31202954 |
T |
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| Q |
173 |
cgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgc |
228 |
Q |
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||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
31202955 |
aacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgc |
31203010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 37016469 - 37016432
Alignment:
| Q |
194 |
caacaaggaacttctatgtcttgtcctcatgttgctgg |
231 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
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| T |
37016469 |
caacaaggaacttcaatgtcttgtcctcatgttgctgg |
37016432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 29560925 - 29560957
Alignment:
| Q |
200 |
ggaacttctatgtcttgtcctcatgttgctggt |
232 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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|
| T |
29560925 |
ggaacttctatgtcatgtcctcatgttgctggt |
29560957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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