View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_23 (Length: 224)
Name: NF16046_low_23
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 33888338 - 33888174
Alignment:
| Q |
15 |
aatataaggagaacaacttgaataaaactacgatacggagtaactgctggagctaatttgccaaacctaatacttcaatcgagttattcattcaaaatag |
114 |
Q |
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| T |
33888338 |
aatataagaagaacaacttgaataaaactacgatacggagtaactgctggagctaatttgtcaaacttaatacttcaatcgagt----cattcaaaatag |
33888243 |
T |
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| Q |
115 |
tgtttggttgtggttttaccaaaaacaatctccatcatttactcgtgatctgccatgacccaacatcta |
183 |
Q |
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| T |
33888242 |
tgtttggttgtggttttaccaaaaacaatctccatcacttactcgtgatctgccatgacccaacatcta |
33888174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 33955911 - 33956075
Alignment:
| Q |
15 |
aatataaggagaacaacttgaataaaactacgatacggagtaactgctggagctaatttgccaaacctaatacttcaatcgagttattcattcaaaatag |
114 |
Q |
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| T |
33955911 |
aatataagaagaacaacttgaataaaactacgatacggagtaactgctggagctaatttgtcaaacttaatacttcaatcgagt----cattcaaaatag |
33956006 |
T |
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| Q |
115 |
tgtttggttgtggttttaccaaaaacaatctccatcatttactcgtgatctgccatgacccaacatcta |
183 |
Q |
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| T |
33956007 |
tgtttggttgtggttttaccaaaaacaatctccatcacttactcgtgatctgccatgacccaacatcta |
33956075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 33888736 - 33888590
Alignment:
| Q |
33 |
tgaataaaactacgatacggagtaactgctggagctaatttgccaaacctaatacttcaatcgagttattcattcaaaatagtgtttggttgtggtttta |
132 |
Q |
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| T |
33888736 |
tgaataaaactacgatacgatgtaactgctagagctaatttgccaaacctaatacttcaatcgagt----cattcaaaatagtgtttggttgtggtttta |
33888641 |
T |
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| Q |
133 |
ccaaaaacaatctccatcatttactcgtgatctgccatgacccaacatcta |
183 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
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| T |
33888640 |
ccaaaaacaatctccatcacttagtcgtgatctgccatgacccagcatcta |
33888590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 33955514 - 33955660
Alignment:
| Q |
33 |
tgaataaaactacgatacggagtaactgctggagctaatttgccaaacctaatacttcaatcgagttattcattcaaaatagtgtttggttgtggtttta |
132 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33955514 |
tgaataaaactacgatacgatgtaactgctagagctaatttgccaaacctaatacttcaatcgagt----cattcaaaatagtgtttggttgtggtttta |
33955609 |
T |
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| Q |
133 |
ccaaaaacaatctccatcatttactcgtgatctgccatgacccaacatcta |
183 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
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| T |
33955610 |
ccaaaaacaatctccatcacttagtcgtgatctgccatgacccagcatcta |
33955660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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