View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_26 (Length: 219)
Name: NF16046_low_26
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 10469221 - 10469010
Alignment:
| Q |
1 |
tgagatgtacacagatcgaatagtttcaatttaccccttttatctcatatgtgttgtataaatcttcattttgtttatgaactgaatgaaatagtataga |
100 |
Q |
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| T |
10469221 |
tgagatgtacacagatcgaatagtttcaatttaccccttttatctcatatgtgctgtataaatcttcattttgtttatgaactgaatgaaatagtataga |
10469122 |
T |
|
| Q |
101 |
ctgtagaatttgatttctgtacatttatcatattctgaagttataaatcagcaagcaagtaggcatcaattggcgtgtgggttttggttgttggttgaaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10469121 |
ctgtaaaatttgatttctgtacatttatcatattctgaagttataaatcagcaagcaagtaggcatcaattggcgtgtgggtttcggttgttggttgaaa |
10469022 |
T |
|
| Q |
201 |
agtttgatgatg |
212 |
Q |
| |
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|||||||||||| |
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| T |
10469021 |
agtttgatgatg |
10469010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 52103021 - 52103233
Alignment:
| Q |
1 |
tgagatgtacacagatcgaatagtttcaatttaccccttttatctcatatgtgttgtataaatcttcattttgtttatgaactgaatgaaatagtataga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52103021 |
tgagatgtacacagatcgaatagtttcaatttaccccttttatctcatatgtgctgtataaatcttcattttgtttatgaactgaatgaaatagtataga |
52103120 |
T |
|
| Q |
101 |
ctgtagaatttgatttctgtacatttatcatattctgaagttataaatcagcaagcaagtaggcatcaattggcgtgtgggttttggttgttggttgaaa |
200 |
Q |
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| T |
52103121 |
ctgtaaaatttgatttctgtacatttatcatattctgaagttataaatcagcaagcaagtaggcatcaattggcgtgtgagtttcggttgttggttgaaa |
52103220 |
T |
|
| Q |
201 |
agtttgatgatgt |
213 |
Q |
| |
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||||||||||||| |
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| T |
52103221 |
agtttgatgatgt |
52103233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42149166 - 42149375
Alignment:
| Q |
1 |
tgagatgtacacagatcgaatagtttcaatttaccccttttatctcatatgtgttgtataaatcttcattttgtttatgaactgaatgaaatagtataga |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42149166 |
tgagatgtacacagat--aatagtttcaatttaccccttttatctcatatgtgttgtataaatcttcattttgtttatgaactgaatgaaatagtataga |
42149263 |
T |
|
| Q |
101 |
ctgtagaatttgatttctgtacatttatcatattctgaagttataaatcagcaagcaagtaggcatcaattggcgtgtgggttttggttgttggttgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42149264 |
ctgtagaatttgatttctgtacatttatcatattctgaagttataaatcagcaagcaagtaggcatcaattggcgtgtgggtttcggttgttggttgaaa |
42149363 |
T |
|
| Q |
201 |
agtttgatgatg |
212 |
Q |
| |
|
|||||||||||| |
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|
| T |
42149364 |
agtttgatgatg |
42149375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 29125939 - 29126151
Alignment:
| Q |
1 |
tgagatgtacacagatcgaatagtttcaatttaccccttttatctcatatgtgttgtataaatcttcattttgtttatgaactgaatgaaatagtataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29125939 |
tgagatgtacacagatcgaatagtttcagtttaccccttttatctcgtatgtgttgcataaatcttcatttggtttatgaactgaatgaaatagtataga |
29126038 |
T |
|
| Q |
101 |
ctgtagaatttgatttctgtacatttatcatattctgaagttataaatcagcaagcaagtaggcatcaattggcgtg-tgggttttggttgttggttgaa |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||| |
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| T |
29126039 |
ctgtagaatttgatttctgtacatttatcatattctgaagttatacatcagcaagcaagtaggcatcgattggtgtgttgggttttggttgttagttgat |
29126138 |
T |
|
| Q |
200 |
aagtttgatgatg |
212 |
Q |
| |
|
||||| ||||||| |
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|
| T |
29126139 |
aagttagatgatg |
29126151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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