View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_3 (Length: 629)
Name: NF16046_low_3
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 8093193 - 8092574
Alignment:
| Q |
1 |
tcgatagagatgttgttgcaatgtctt-agcaccgaaagacgagcatgaagcacaagttcaatttgccctcgagagaggcattcctgccatatctgctgt |
99 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8093193 |
tcgatagagatgttgttgcaatgtctttagcaccgaaagacgagcatgaagcacaagttcaatttgccctcgagagaggcattcctgccatatctgctgt |
8093094 |
T |
|
| Q |
100 |
catgggttctcaaaggcttccattccccaacggcgtttttgatcttattcattgtgcacgttgtcgagtaccttggcatgaagaaggttggtatctgtaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8093093 |
catgggttctcaaaggcttccattccccaacggcgtttttgatcttattcattgtgcacgttgtcgagtaccttggcatgaagaaggttggtatcagtaa |
8092994 |
T |
|
| Q |
200 |
tgtttatgctgggctagatttttcatttggttgagcatggttaatgaggaatatgaaacttcgtttttaggtggcaagctgctattggaattgaatcggg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092993 |
tgtttatgctgggctagatttttcatttggttgagcatggttaataaggaatatgaaacttcgtttttaggtggcaagctgctattggaattgaatcggg |
8092894 |
T |
|
| Q |
300 |
ttttgcgaccaggtggttattttgcttggtctgctactcctgtataccaaaagcttgaagaagatgttgagatatggaagggtaggaccacatatcatat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092893 |
ttttgcgaccaggtggttattttgcttggtctgctactcctgtataccaaaagcttgaagaagatgttgagatatggaagggtaggaccacatatcatat |
8092794 |
T |
|
| Q |
400 |
ctctatagtctatatgttattaagaagataataactccacatttattgtgcttccttctagaaatgacctcactaactaaggccatgtgttgggagcttg |
499 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092793 |
ctctatagtctatatgttattaagaagataataactccacatttattgtgcttccttctagaaatgacctcactaactaaggccatgtgttgggagcttg |
8092694 |
T |
|
| Q |
500 |
tgactatcaacaaggataaactgaaccatgttggtgtcgccatttaccgcaaacccgcttctaacgactgttatgagcgaagagagaaaagccaacctcc |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8092693 |
tgactatcaacaaggataaactgaaccatgttggtgtcgccatttaccgcaaacccgcttctaacgactgttatgaacgaagagagaaaagccaacctcc |
8092594 |
T |
|
| Q |
600 |
actatgcaaggatgatgatg |
619 |
Q |
| |
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|||||||||||||||||||| |
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| T |
8092593 |
actatgcaaggatgatgatg |
8092574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 32507925 - 32508109
Alignment:
| Q |
6 |
agagatgttgttgcaatgtctta-gcaccgaaagacgagcatgaagcacaagttcaatttgccctcgagagaggcattcctgccatatctgctgtcatgg |
104 |
Q |
| |
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||||||||| |||| ||||||| || || ||||| |||||||||||||||||||| ||||| || |||||||| || || || |||||||||||||||| |
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| T |
32507925 |
agagatgttattgctatgtcttttgccccaaaagatgagcatgaagcacaagttcagtttgcacttgagagaggaataccagctatatctgctgtcatgg |
32508024 |
T |
|
| Q |
105 |
gttctcaaaggcttccattccccaacggcgtttttgatcttattcattgtgcacgttgtcgagtaccttggcatgaagaaggttg |
189 |
Q |
| |
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|| |||||||| | | |||||| | | | || || |||||||| |||||||| || ||||||||||||||||||||||||||||| |
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| T |
32508025 |
gtactcaaaggttgcaattcccaagccgtgtcttcgatcttatacattgtgcgcgatgtcgagtaccttggcatgaagaaggttg |
32508109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 267 - 379
Target Start/End: Original strand, 32508199 - 32508311
Alignment:
| Q |
267 |
taggtggcaagctgctattggaattgaatcgggttttgcgaccaggtggttattttgcttggtctgctactcctgtataccaaaagcttgaagaagatgt |
366 |
Q |
| |
|
||||||| ||| |||| ||||||||||| |||||| | |||||||||||| ||||| |||||||| |||||||| ||||||| | | || |||||||| |
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| T |
32508199 |
taggtggtaagttgcttttggaattgaaccgggttcttagaccaggtggtttttttgtatggtctgccactcctgtgtaccaaacgttagaggaagatgt |
32508298 |
T |
|
| Q |
367 |
tgagatatggaag |
379 |
Q |
| |
|
|||||||||||| |
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|
| T |
32508299 |
ggagatatggaag |
32508311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 44101969 - 44102072
Alignment:
| Q |
3 |
gatagagatgttgttgcaatgtct-tagcaccgaaagacgagcatgaagcacaagttcaatttgccctcgagagaggcattcctgccatatctgctgtca |
101 |
Q |
| |
|
||||||||||| |||||||||| | ||||| || || || |||||||| || ||||||||||| || ||||| || |||||||| ||||||||||| | |
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| T |
44101969 |
gatagagatgtacttgcaatgtcacttgcaccaaaggatgaacatgaagctcaggttcaatttgctcttgagagggggattcctgctatatctgctgtaa |
44102068 |
T |
|
| Q |
102 |
tggg |
105 |
Q |
| |
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|||| |
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|
| T |
44102069 |
tggg |
44102072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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