View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_4 (Length: 578)
Name: NF16046_low_4
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 28 - 562
Target Start/End: Original strand, 3893396 - 3893917
Alignment:
| Q |
28 |
cacaacacaatgaagttggttcacaatcatgttcgcaaacttttaaactttttgagatctgagaaatatgtttatccttactttccttgtcattagcaaa |
127 |
Q |
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| T |
3893396 |
cacaacacaaagaagttggttcacaattatgttcgcaaacttttaaagttt--gagatctgagaaataggtttatccttactttcctcgtctttagcaaa |
3893493 |
T |
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| Q |
128 |
agggtttttgatgaactttta-aaaagcgctgctcgagctgattgatcttataacatatatgaaggtgtatacatatctattgggtatctacctaacatt |
226 |
Q |
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| T |
3893494 |
agagtttttgatgaacttttataaaagcgctgctcgtgctgattgatcttataacatctatgaaggtgtatacat--ctattggttatctacctaacatt |
3893591 |
T |
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| Q |
227 |
tttctcatttggttgttgctcaacaaatctcatatcaagctttgaaaacaaagctacacgattacgactatcttatgagggtaaccgattgtttttgaat |
326 |
Q |
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| T |
3893592 |
tttctcatttggttgttgctcaacaaatctcacatcaagctttgaaaacaaagctacacgattatgactatcttatgagggtagccgattgtttttgaat |
3893691 |
T |
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| Q |
327 |
cttttattggagtgtaatgtggaataatttctctctgtataagttaacaagttattttaacttgctccttagcatttccctttttcttaaatatcgaaac |
426 |
Q |
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| T |
3893692 |
cttttattggagtgtaatgcggaataatttctctctgtataagttaacaagttattttaacttgcaccttagcatttccctttttcttaaatatcgaaac |
3893791 |
T |
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| Q |
427 |
atgcttcaagtgctcattgatgacttatgacggaataggtccagaacacacccacacgactcgtagcatgacatttgtataaaattttcattgctcttac |
526 |
Q |
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| T |
3893792 |
atgctt-------tcattgatgacttatgacggaataggtccagaacacacccacacgactcgtagcatgacatttgtataaaattttcattgctcttac |
3893884 |
T |
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| Q |
527 |
aattatctatgccaacaaccaaaaaatgaatagaag |
562 |
Q |
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| T |
3893885 |
aattatctatgc---caaccaaaaaatgaatagaag |
3893917 |
T |
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