View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_5 (Length: 566)
Name: NF16046_low_5
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Complemental strand, 8093726 - 8093178
Alignment:
| Q |
18 |
acactgtcctgaggaaggacctacttgccttgtgcaacttcctaatggttacaaaacatccatcaaatggcccaatagtagagataaggtaagtttgatt |
117 |
Q |
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| T |
8093726 |
acactgtcctgaggaaggacctacttgccttgtgccacttcctaatggttacaaaacatccatcaaatggcccaatagtagagataaggtcagtttgatt |
8093627 |
T |
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| Q |
118 |
caaaggtatatataatacatttatggagactttgataatgtcattttcaaaattggaaacattgttattatgtatgaaaataggtatggtaccacaacgt |
217 |
Q |
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| T |
8093626 |
caaaggtatatctaatacatttatggagactttgataatgtcattttcaaaattggaaacattgttattatgtatgaaaataggtatggtaccacaacgt |
8093527 |
T |
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| Q |
218 |
accgcacacgtcgctggccgaggttaagggacatcagaattgggtgaaggtgtcaggtgaattcttgacattcccaggaggtggcactcaattcattcat |
317 |
Q |
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| T |
8093526 |
accgcacacgtcgctggccgaggttaagggacatcagaattgggtgaaggtgtcaggtgaattcttgacattcccaggaggtggcactcaattcattcat |
8093427 |
T |
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| Q |
318 |
ggagctctacactacattgattttctccaacaggtagttgcaaatttaatttataaactaatcattttctagtacttaataattaggagtgatgcataga |
417 |
Q |
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| T |
8093426 |
ggagctctacactacattgattttctccaacaggtagttgcaaatttaatttataaactaatcattttctagtacttaataattaggagtgatgcataga |
8093327 |
T |
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| Q |
418 |
ccagaaaatgaatttatatcttgctaatcataatttctaacattgcaggctgaacctgatattgcatggggaaagcacacaagggtgattttggatgttg |
517 |
Q |
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| T |
8093326 |
ccagaaaatgaatttatatcttgctaatcataatttccaacattgcaggctgaacctgatattgcatggggaaagcgcacaagggtgattttggatgttg |
8093227 |
T |
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| Q |
518 |
ggtgtggggttggaagttttggcggttacctattcgatagagatgttgt |
566 |
Q |
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| T |
8093226 |
ggtgtggggttggaagttttggcggttacctattcgatagagatgttgt |
8093178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 32507470 - 32507580
Alignment:
| Q |
243 |
aagggacatcagaattgggtgaaggtgtcaggtgaattcttgacattcccaggaggtggcactcaattcattcatggagctctacactacattgattttc |
342 |
Q |
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| T |
32507470 |
aagggacatcaaaattgggtgaagttgatgggtgagtttttgacattccctggtggtggcactcagttcattcatggtgctctccattatattgattttc |
32507569 |
T |
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| Q |
343 |
tccaacaggta |
353 |
Q |
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| T |
32507570 |
ttcaaaaggta |
32507580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 564
Target Start/End: Original strand, 32507844 - 32507933
Alignment:
| Q |
475 |
gatattgcatggggaaagcacacaagggtgattttggatgttgggtgtggggttggaagttttggcggttacctattcgatagagatgtt |
564 |
Q |
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| T |
32507844 |
gatattgcatgggggaagcatacaagggttatacttgacgttgggtgtggtgttggtagttttggaggttacctatttgaaagagatgtt |
32507933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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