View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16046_low_9 (Length: 418)
Name: NF16046_low_9
Description: NF16046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16046_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 33576338 - 33576728
Alignment:
| Q |
19 |
gttacagtttacatatttcatcaagccttaatcacaaacaagtaacatttaacagaaagaaaagaagnnnnnnnnnctgatgaaaatcaaaccagaactt |
118 |
Q |
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| T |
33576338 |
gttacagtttacatatttcatcaagccttaatcacaaacaagtaacattcaacagaaagaaaagaagaaaaaaaaactgatgaaaatcaaaccagaactt |
33576437 |
T |
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| Q |
119 |
aagggcaacataaacaagttcagttgtctcagacaattccaatccaatagattgatagcatgacaatatcaaatgataagtaacataacaatgaatcaaa |
218 |
Q |
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| T |
33576438 |
aagagcaacataaacaagttcagttgtctcagacaattccaatccaatagattgatagcatgacaatatcaaatgataagtaacataacaatgaatcaaa |
33576537 |
T |
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| Q |
219 |
atgttctgtagaggacattggtataaacgtcaaatggtacgaattatgaaactattcaatccaaatggacatcggtataaacaccaaatgatacggtgca |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33576538 |
atgttctgtagaggacattggtataaacgccaaatggtacgaattatgaaactattcaatccaaatggacatcggtataaacaccaaatgatacagtgca |
33576637 |
T |
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| Q |
319 |
gtatgattcattttaactcagaagtct--aaaaaatcatcacaaaatcatccattattaaactatcaattatcaaaatctttgatcttctt |
407 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33576638 |
gtatgattcattttaactcagaagtctaaaaaaaatcatcacaaaaacatccattattaaactatcaattatcaaaatctttgatcttctt |
33576728 |
T |
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