View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16047_high_10 (Length: 343)
Name: NF16047_high_10
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16047_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 131 - 322
Target Start/End: Original strand, 5282001 - 5282211
Alignment:
| Q |
131 |
gcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaacttgtagaatccacacaatactatcaaggac----------------- |
213 |
Q |
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| T |
5282001 |
gcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaactcgtagaatc-acataacactatcaatgacactagctaacatgtgac |
5282099 |
T |
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| Q |
214 |
---tcatatgcaaggcaaatattctgcaccaccctttgaaaaatctgatgtggtataaacaatgttgtctacaacaaacaagtttttgatccaatatctc |
310 |
Q |
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| T |
5282100 |
gactcatatgcaagccaaatattctgcaccaccgtctgaaaaatctgatgtggtataaacaatgttgcctacaacaaacaagtttttgatccaatatctc |
5282199 |
T |
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| Q |
311 |
tgaaaaacatcc |
322 |
Q |
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|||||| ||||| |
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| T |
5282200 |
tgaaaagcatcc |
5282211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 5254995 - 5255113
Alignment:
| Q |
211 |
gactcatatgcaaggcaaatattctgcacc----accctttgaaaaatctgatgtggtataaacaatgttgtctacaacaaacaagtttttgatccaata |
306 |
Q |
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| T |
5254995 |
gactcatatgcaagccaactattctgcaaattaaaccctttgaaaaatctgatgtggtataaacaatgttgcttacaacaaacaagtttttgatccaata |
5255094 |
T |
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| Q |
307 |
tctctgaaaaacatccccc |
325 |
Q |
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| T |
5255095 |
tctctgaaaagcatccccc |
5255113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5281892 - 5281977
Alignment:
| Q |
1 |
aaattaagttttgttaatgtaagtgaaaaataaaattcgttagtagcgagaccaaaaatacaattagatacattttccatatcata |
86 |
Q |
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| T |
5281892 |
aaattaatttttgttaatgtaagtgaaaaataaaatacgttattagcgagaccaaaaatacaattaaatacattttccatatcata |
5281977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 5254852 - 5254954
Alignment:
| Q |
84 |
ataggaactgctgtacgaaggtg--catgacatgtggattcctgaccaagcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatga |
181 |
Q |
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|||||||||| |||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5254852 |
ataggaactgttgtacgaaggtgtgcatgacttgtggatttccgaccaagcaggttttattgtaaggagtcaagtgttaacctcggagacatgtgaatga |
5254951 |
T |
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| Q |
182 |
act |
184 |
Q |
| |
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||| |
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| T |
5254952 |
act |
5254954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 5180321 - 5180399
Alignment:
| Q |
106 |
gcatgacatgtggattcctgaccaagcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaact |
184 |
Q |
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| T |
5180321 |
gcatgacttgtggatttccgaccaagcaggttttattgtaaggagtcaagtgttaacctcagagacatgtgaatgaact |
5180399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 5440160 - 5440061
Alignment:
| Q |
216 |
atatgcaaggcaaatattctgcaccaccctttgaaaaatctgatg---tggtataaacaatgttgtctacaacaaacaagtttttgatccaatatctctg |
312 |
Q |
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||||||||| |||| ||||||||||||| |||||||||||||| ||||| |||||||| ||| | | |||||| |||||||||||||| |||||| |
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| T |
5440160 |
atatgcaagccaaagtttctgcaccacccactgaaaaatctgatgtggtggtagaaacaatgatgtattaagcaaacatgtttttgatccaatgtctctg |
5440061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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