View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16047_high_11 (Length: 330)
Name: NF16047_high_11
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16047_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 21544376 - 21544063
Alignment:
| Q |
1 |
aaaggtaaacattatttaattattagcaaccttcaataggtccagttgaacctcaattattggataaatcctatttatcggtcattggattgatccaacg |
100 |
Q |
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| T |
21544376 |
aaaggtaaacattatttaattattagcaaccttcgataggtccagttgaacctcaattattggataaatcctatttatcggtcattggattgatccaacg |
21544277 |
T |
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| Q |
101 |
atttggtaatgtatcgtatttgtaaattaaataaaaagggtaaagtgcattacaagtttaattctgactttgcagacccgcaagaagaacgtagtagtac |
200 |
Q |
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| T |
21544276 |
attgggtaaggtatcgtatttgtaaattaaataaaaagggtaaagtgcattagaagtttaattctgactttgcagacccgcaagaagaacgtagtagtac |
21544177 |
T |
|
| Q |
201 |
aagcacttgatgaacaaggacgccctttaccaaatgcaagaatatctattacgatgaagaggtatggttttccatttggaagtgccatgaacaaatacat |
300 |
Q |
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| T |
21544176 |
aagcacttgatgaacaaggacgccctttaccaaatgcaagaatatctattacgatgaagaggtatggttttccatttggaagtgccatgaacaaatacat |
21544077 |
T |
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| Q |
301 |
cctgagcaatactg |
314 |
Q |
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| T |
21544076 |
cctgagcaatactg |
21544063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 121 - 311
Target Start/End: Complemental strand, 8023960 - 8023770
Alignment:
| Q |
121 |
tgtaaattaaataaaaagggtaaagtgcattacaagtttaattctgactttgcagacccgcaagaagaacgtagtagtacaagcacttgatgaacaagga |
220 |
Q |
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| T |
8023960 |
tgtaaaattaataaaaaggataaagtgcataacacgtttaattctaaccttgcaggaccgtaagaggaaagtagtagttcgagcagttaacgaacaagga |
8023861 |
T |
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| Q |
221 |
cgccctttaccaaatgcaagaatatctattacgatgaagaggtatggttttccatttggaagtgccatgaacaaatacatcctgagcaata |
311 |
Q |
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| T |
8023860 |
caccctttaccaaatgcaagtatatctcttacaatgaagaggccgggttttccatttggaagtgccatcaacaaaaacatcctgaacaata |
8023770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 28152795 - 28152852
Alignment:
| Q |
195 |
tagtacaagcacttgatgaacaaggacgccctttaccaaatgcaagaatatctattac |
252 |
Q |
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| T |
28152795 |
tagtccaagcactagacgaacaaggacaccctttaccaaatgcgagcatatatattac |
28152852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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