View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16047_high_14 (Length: 259)
Name: NF16047_high_14
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16047_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 5685400 - 5685176
Alignment:
| Q |
14 |
gaagaatatagctaactcggtaaagtgatatcgtttattaaaatatctcaacaaatacctacatagtaaaatttgattgaacggcggtgtaagtgcatag |
113 |
Q |
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| T |
5685400 |
gaagaatatagctaactcggtaaagtgatatcgtttattaaaatatctcaacaaatacctacatagtaaaatttgattgaacggcggtgtaagtgcatag |
5685301 |
T |
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| Q |
114 |
ttatcaaaatctattgtaatttgtaagtacatgaaattttacattacatacaataagaacttataccaacataatatcaaaattataacctacgcgaaca |
213 |
Q |
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| T |
5685300 |
ttatcaaaatctattgtaatttgtaagtacatgaaattttacattacatgcaataagaacttacaccaacataatatcaaaattataacctacgcgaaca |
5685201 |
T |
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| Q |
214 |
ttgaagtaaaattataacttacttg |
238 |
Q |
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| T |
5685200 |
ttgaagtaaaattataacttacttg |
5685176 |
T |
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