View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16047_high_4 (Length: 473)
Name: NF16047_high_4
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16047_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 47529571 - 47529116
Alignment:
| Q |
1 |
atataaatgaagcacacaatatccaatttggatttagtgagtacataaatactcatttcatttgtcaccatcatatctaattaatctaagttacacatca |
100 |
Q |
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| T |
47529571 |
atataaatgaagcacacaatatccaatttggatttagtgagtacataaatactcatttcatttgtcaccatcatatctaattaatctaagttacacatca |
47529472 |
T |
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| Q |
101 |
gtcatggattaattaaacattctcaatcaagattaatcaagaaacataaaaacaatttacaaagtcaacaatatatgctccaaacatgcttctgggagaa |
200 |
Q |
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| T |
47529471 |
gtcatggattaattaaacattctcaatcaagattaatcaagaaacataaaaacaatttacaaagtcaacaatatatgctccaaacatgcttctgggagaa |
47529372 |
T |
|
| Q |
201 |
tttgtttctctcaaggcctattggctatcctaattcctaactctaggaatttccccagttnnnnnnnttagactagctcaaaagtcaacaagaataggcc |
300 |
Q |
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| T |
47529371 |
tttgtttctctcaaggcctattggctatcctaattcctaactctaggaatttccccagttaaaaaaattagactagctcaaaagtcaacaagaataggcc |
47529272 |
T |
|
| Q |
301 |
ttaactttcaaataggaaagaaaagtattgtctcaaaacaatgtgttcatgaaaacatcatgtaatcaaattattctatcacttgtcttcttcggcacca |
400 |
Q |
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| T |
47529271 |
ttaactttcaaataggaaagaaaagtattgtctcaaaacaatgtgttcatgaaaacattatgtaatcaaattattctatcacttgtcttcttcggcacca |
47529172 |
T |
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| Q |
401 |
ccacgaattcgactctgaagatgttccaagctagccacccgtggcagggaatttgt |
456 |
Q |
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| T |
47529171 |
ccacgaattcgactctgaagatgttccaagctagccacccgtggcagggaatttgt |
47529116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 47538378 - 47538273
Alignment:
| Q |
287 |
aacaagaataggccttaactttcaaataggaaagaaaagtattgtctcaaaacaatgtgttcatgaaaacatcatgtaatcaaattattctatcacttgt |
386 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47538378 |
aacaagaaagggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatcacttgt |
47538279 |
T |
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| Q |
387 |
cttctt |
392 |
Q |
| |
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|||||| |
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| T |
47538278 |
cttctt |
47538273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 47544935 - 47544830
Alignment:
| Q |
287 |
aacaagaataggccttaactttcaaataggaaagaaaagtattgtctcaaaacaatgtgttcatgaaaacatcatgtaatcaaattattctatcacttgt |
386 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47544935 |
aacaagaaagggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatcacttgt |
47544836 |
T |
|
| Q |
387 |
cttctt |
392 |
Q |
| |
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|||||| |
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|
| T |
47544835 |
cttctt |
47544830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 297 - 393
Target Start/End: Complemental strand, 47551141 - 47551045
Alignment:
| Q |
297 |
ggccttaactttcaaataggaaagaaaagtattgtctcaaaacaatgtgttcatgaaaacatcatgtaatcaaattattctatcacttgtcttcttc |
393 |
Q |
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| T |
47551141 |
ggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatcacttgtcttcttc |
47551045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 47538514 - 47538453
Alignment:
| Q |
140 |
agaaacataaaaacaatttacaaagtcaacaatatatgctccaaacatgcttctgggagaat |
201 |
Q |
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| T |
47538514 |
agaaacataaaaacaatttaccaagtcaacaatatatgttccagacatgcttctggaagaat |
47538453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 47545071 - 47545010
Alignment:
| Q |
140 |
agaaacataaaaacaatttacaaagtcaacaatatatgctccaaacatgcttctgggagaat |
201 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||| |
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| T |
47545071 |
agaaacataaaaacaatttaccaagtcaacaatatatgttccagacatgcttctggaagaat |
47545010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 47551338 - 47551227
Alignment:
| Q |
84 |
atctaagttacacatcagtcatggattaattaaa-cattctcaatcaagattaatcaagaaacataaaaacaatttacaaa----gtcaacaatatatgc |
178 |
Q |
| |
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|||||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||| |
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| T |
47551338 |
atctaagttacacatcagccattgattaatcaaagcattctcaatcaatattaa----gaaacataaaaacaatttaccaaccaagtcaacaatatatgt |
47551243 |
T |
|
| Q |
179 |
tccaaacatgcttctg |
194 |
Q |
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||||||||||| |||| |
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| T |
47551242 |
tccaaacatgcatctg |
47551227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 36006423 - 36006468
Alignment:
| Q |
396 |
caccaccacgaattcgactctgaagatgttccaagctagccacccg |
441 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
36006423 |
caccaccacgaatccgcttctgaagatgttccaagctagccacccg |
36006468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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