View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16047_high_7 (Length: 403)
Name: NF16047_high_7
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16047_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 29857449 - 29857824
Alignment:
| Q |
14 |
gaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaact |
113 |
Q |
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| T |
29857449 |
gaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaact |
29857548 |
T |
|
| Q |
114 |
ttcacctgatttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctgcattctcaccagta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29857549 |
ttcacctgatttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctgcattctcaccagta |
29857648 |
T |
|
| Q |
214 |
gcaaccacaagcgacctacaaatatactcaacttcatttccattggaaacagtctcaactctccacaacccattagtctcatcatatttagcagattgaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29857649 |
gcaaccacaagcgacctacaaatatactcaacttcatttccattggaaacagtctcaactctccacaacccattagtctcatcatatttagcagattgaa |
29857748 |
T |
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| Q |
314 |
cacactcgttgaatcgcgggttgatttcaaagtgtttcgcgtaggattcaagatagtttatgaactgtttctttgt |
389 |
Q |
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| T |
29857749 |
cacactcgttgaatcgcgggttgatttcaaagtgtttcgcgtaggattcaagatagtttatgaactgtttctttgt |
29857824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 888387 - 888481
Alignment:
| Q |
16 |
acaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
110 |
Q |
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| T |
888387 |
acaatagaaggagcagcatcatgattacaaagatccaaacaaacttccatacctgaatttccacatccaacaaccaaaactttcttccctctaaa |
888481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 17408190 - 17408075
Alignment:
| Q |
30 |
tgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctgatttataa |
129 |
Q |
| |
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||||||||| || |||||||||||||||| |||||| |||||||| ||||| |||||||| | ||| || || || ||| || | |||| |||||||| |
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| T |
17408190 |
tgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagatttatag |
17408091 |
T |
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| Q |
130 |
tcacaagcatgaataa |
145 |
Q |
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||||||||||| |||| |
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| T |
17408090 |
tcacaagcatgcataa |
17408075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 17408018 - 17407974
Alignment:
| Q |
205 |
tcaccagtagcaaccacaagcgacctacaaatatactcaacttca |
249 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
17408018 |
tcaccggtagcaaccacaagccacctacaaatatactcaacttca |
17407974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 388
Target Start/End: Complemental strand, 39839558 - 39839207
Alignment:
| Q |
22 |
gaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctg |
121 |
Q |
| |
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|||||| | |||| |||||||| ||||||||| || ||||||||||||||||| ||||| |||||||| | ||||||||| ||| |||| ||| |||| |
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| T |
39839558 |
gaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctg |
39839459 |
T |
|
| Q |
122 |
atttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctgcattctcaccagtagcaaccac |
221 |
Q |
| |
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| || ||||||||||||| || || |||||| ||||||||| | | |||||||| | ||| ||||||||| ||||| || || |||||||| || |
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| T |
39839458 |
acttgtaatcacaagcataaacaacttcacctttgaattcagaa---agtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaac |
39839362 |
T |
|
| Q |
222 |
aagcgacctacaaatatactcaacttcatttccattggaaacagtctcaactctccacaacccattagtctcatcatatttagcagattgaacacactcg |
321 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||| || |||||||| ||| | || |||||||| ||||||||||||||||||||| |
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| T |
39839361 |
aagccacctacaaatatactcaacttcattt------------gtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactcg |
39839274 |
T |
|
| Q |
322 |
ttgaatcgcgggttgatttcaaagtgtttcgcgtaggattcaagatagtttatgaactgtttctttg |
388 |
Q |
| |
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|||||| |||||||||||||||| | || || ||| |||||| ||| ||||||| |||||||||| |
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| T |
39839273 |
ttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttg |
39839207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 22 - 344
Target Start/End: Original strand, 39733400 - 39733707
Alignment:
| Q |
22 |
gaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctg |
121 |
Q |
| |
|
|||||| | |||| |||||||| ||||||||| || ||||||||||||||||| ||||| |||||||| | ||||||||| ||| |||| ||| |||| |
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| T |
39733400 |
gaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctg |
39733499 |
T |
|
| Q |
122 |
atttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctgcattctcaccagtagcaaccac |
221 |
Q |
| |
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| || ||||||||||||| || || |||||| ||||||||| | | |||||||| | ||| ||||||||| ||||| || || |||||||| || |
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| T |
39733500 |
acttgtaatcacaagcataaacaacttcacctttgaattcagaa---agtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaac |
39733596 |
T |
|
| Q |
222 |
aagcgacctacaaatatactcaacttcatttccattggaaacagtctcaactctccacaacccattagtctcatcatatttagcagattgaacacactcg |
321 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||| || |||||||| ||| | || |||||||| ||||||||||||||||||||| |
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| T |
39733597 |
aagccacctacaaatatactcaacttcattt------------gtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactcg |
39733684 |
T |
|
| Q |
322 |
ttgaatcgcgggttgatttcaaa |
344 |
Q |
| |
|
|||||| |||||||||||||||| |
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| T |
39733685 |
ttgaattgcgggttgatttcaaa |
39733707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 50667908 - 50667841
Alignment:
| Q |
43 |
caaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
110 |
Q |
| |
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|||||||| | | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50667908 |
caaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
50667841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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