View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16047_high_8 (Length: 363)
Name: NF16047_high_8
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16047_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 4 - 348
Target Start/End: Original strand, 33679322 - 33679666
Alignment:
| Q |
4 |
accacacaccctttattgtatcaacatgcaaacttcttcggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacctttg |
103 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
33679322 |
accacacaccctttattgtatcaatatgcaaacttctttggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacgtatg |
33679421 |
T |
|
| Q |
104 |
atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33679422 |
atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc |
33679521 |
T |
|
| Q |
204 |
ctttcttggatgagaaaaacatgaagccaggggacaaattatttgagaaaatcaatgggggagtcatggagagcaaaattggggtggcggttttctctcc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33679522 |
ctttcttggatgagaaaaacatgaagccaggggacaaattatttgagaaaatcaacgggggagtcatggagagcaaaattggggtggcggttttctctcc |
33679621 |
T |
|
| Q |
304 |
gcgttattgtgagtcttatttttgcctccatgaacttgtcctttt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33679622 |
gcgttattgtgagtcttatttttgcctccatgaacttgccctttt |
33679666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 4 - 348
Target Start/End: Original strand, 33686789 - 33687133
Alignment:
| Q |
4 |
accacacaccctttattgtatcaacatgcaaacttcttcggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacctttg |
103 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
33686789 |
accacacaccctttattgtatcaatatgcaaacttctttggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacgtatg |
33686888 |
T |
|
| Q |
104 |
atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33686889 |
atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc |
33686988 |
T |
|
| Q |
204 |
ctttcttggatgagaaaaacatgaagccaggggacaaattatttgagaaaatcaatgggggagtcatggagagcaaaattggggtggcggttttctctcc |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33686989 |
ctttcttggatgagaaaaacatgaagccaggggacaaattatttgagaaaatcaacgggggagtcatggagagcaaaattggggtggcggttttctctcc |
33687088 |
T |
|
| Q |
304 |
gcgttattgtgagtcttatttttgcctccatgaacttgtcctttt |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33687089 |
gcgttattgtgagtcttatttttgcctccatgaacttgccctttt |
33687133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 4 - 348
Target Start/End: Original strand, 33703843 - 33704187
Alignment:
| Q |
4 |
accacacaccctttattgtatcaacatgcaaacttcttcggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacctttg |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
33703843 |
accacacaccctttattgtatcaatatgcaaacttctttggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacgtatg |
33703942 |
T |
|
| Q |
104 |
atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc |
203 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33703943 |
atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc |
33704042 |
T |
|
| Q |
204 |
ctttcttggatgagaaaaacatgaagccaggggacaaattatttgagaaaatcaatgggggagtcatggagagcaaaattggggtggcggttttctctcc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33704043 |
ctttcttggatgagaaaaacatgaagccaggggacaaattatttgagaaaatcaacgggggagtcatggagagcaaaattggggtggcggttttctctcc |
33704142 |
T |
|
| Q |
304 |
gcgttattgtgagtcttatttttgcctccatgaacttgtcctttt |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33704143 |
gcgttattgtgagtcttatttttgcctccatgaacttgccctttt |
33704187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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