View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16047_low_1 (Length: 1116)

Name: NF16047_low_1
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16047_low_1
NF16047_low_1
[»] chr8 (3 HSPs)
chr8 (110-1101)||(15139415-15140394)
chr8 (99-142)||(13650776-13650819)
chr8 (99-142)||(13709419-13709462)
[»] chr4 (5 HSPs)
chr4 (2-131)||(31201769-31201885)
chr4 (66-128)||(31215023-31215086)
chr4 (99-141)||(22402404-22402446)
chr4 (2-51)||(31214972-31215021)
chr4 (86-141)||(27131669-27131725)
[»] chr2 (3 HSPs)
chr2 (81-139)||(42654344-42654402)
chr2 (80-141)||(16047666-16047727)
chr2 (99-141)||(8518053-8518095)
[»] chr6 (2 HSPs)
chr6 (86-141)||(2468469-2468525)
chr6 (98-143)||(27832643-27832688)
[»] chr5 (3 HSPs)
chr5 (78-143)||(13049974-13050040)
chr5 (74-128)||(14658468-14658522)
chr5 (68-120)||(30271679-30271732)
[»] chr3 (1 HSPs)
chr3 (68-137)||(17105251-17105321)
[»] chr1 (1 HSPs)
chr1 (64-121)||(4493763-4493820)


Alignment Details
Target: chr8 (Bit Score: 902; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 902; E-Value: 0
Query Start/End: Original strand, 110 - 1101
Target Start/End: Complemental strand, 15140394 - 15139415
Alignment:
Q  110 attgaatgtaaccacatgtgtcggtgtcgtgtcatgtcagggtgatatgggactattgaaagtccaattaaaagaaaaaggagaaaggtctcaaaaacaa 209  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15140394 attgaatgtaaccacacgtgtcggtgtcgtgtcatgtcagggtgatatgggactattgaaagtccaattaaaagaaaaaggagaaaggtctcaaaaacaa 15140295  T
Q  210 gggccaatccttataaaagcttttgagtttgaggccatgattggataaatagcttaaatgcttaaagcatagtgattatcatataagcttttcgagtttt 309  Q
    ||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15140294 gggccaatcctt------------gagtttgaggccatgattggataaatagcttaaatgcttaaagcatagtgattatcatataagcttttcgagtttt 15140207  T
Q  310 agaccttgtgttgtgaatttgtgatgactaaatnnnnnnncatcgttacaaagcatgcatgaaataacctatactactatacaacaaatgacttgcaggc 409  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15140206 agaccttgtgttgtgaatttgtgatgactaaataaaaaaacatcgttacaaagcatgcatgaaataacctatactactatacaacaaatgacttgcaggc 15140107  T
Q  410 cacatagacaagagtatttggatctgacagcaaaagttttgaagaccatatggtggtttgtatttgacaaagaaacaacgaacaacagattcatgtttta 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15140106 cacatagacaagagtatttggatctgacagcaaaagttttgaagaccatatggtggtttgtatttgacaaagaaacaacgaacaacagattcatgtttta 15140007  T
Q  510 ccaccgcgggtctagcgctagtggttggtgcgcagtgtgtgttgaagaccctgagataccaaattcaattcttaatcataaaaagaaagaacagattcaa 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15140006 ccaccgcgggtctagcgctagtggttggtgcgcagtgtgtgttgaagaccctgagataccaaattcaattcttaatcataaaaagaaagaacagattcaa 15139907  T
Q  610 gaacttgtgttcaagcatacctctatgttcaagcaatcatcagaattagagttgcatgtaagatactcggaagctgcaatatcattctgcagttcacctg 709  Q
    |||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15139906 gaacttgtgttcgagcatacctctatgttcaagaggtcatcagaattagagttgcatgtaagatactcggaagctgcaatatcattctgcagttcacctg 15139807  T
Q  710 atagaaacaaaagaatgcatgtgtattaagcaattttgtacatcaataccatagaaattgtttaggtaacttattcaaaataaaatatagaaaagtgtaa 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15139806 atagaaacaaaagaatgcatgtgtattaagcaattttgtacatcaataccatagaaattgtttaggtaacttattcacaataaaatatagaaaagtgtaa 15139707  T
Q  810 aaagagttattaccaggtgtattgctgcattggttttcaggataaaagtaaaaggacttgtttgagttttcagcacagggaaaatcttctagtatcgaat 909  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15139706 aaagagttattaccagctgtattgctgcattggttttcaggataaaagtaaaaggacttgtttgagttttcagcacagggaaaatcttctagtatcgaat 15139607  T
Q  910 ccctgcattatgtaaaacatatgaagactgtaagataacgcagtcatatcatataaattgaattaatttcatgcctatggtagccagtgagaattgaatg 1009  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15139606 ccctgcattatgtaaaacatatgaagactgtaagataacgcagtcatatcatataaattgaattaatttcatgcctatggtagccagtgagaattgaatg 15139507  T
Q  1010 tctctgttaagtatatttttgtatgcaatatttaaaatataagatcattttcataccacaatcatcattaaatacatgtttaaatatgtttt 1101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15139506 tctctgttaagtatatttttgtatgcaatatttaaaatataagatcattttcataccacaatcatcattaaatacatgtttaaatatgtttt 15139415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 13650776 - 13650819
Alignment:
Q  99 aaatagaagttattgaatgtaaccacatgtgtcggtgtcgtgtc 142  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||    
T  13650776 aaatagaagttaatgaatgtaactacatgtgacggtgtcgtgtc 13650819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 13709419 - 13709462
Alignment:
Q  99 aaatagaagttattgaatgtaaccacatgtgtcggtgtcgtgtc 142  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||    
T  13709419 aaatagaagttaatgaatgtaactacatgtgacggtgtcgtgtc 13709462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 31201769 - 31201885
Alignment:
Q  2 ctatgtatataattaataggaagtctaaacagatatgaaaaattgatacaaacatagacacccaacactgacacataaacaccagtaataatttaac-aa 100  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||             ||||| |||||||||||||| ||||||| | ||| ||    
T  31201769 ctatgtatgtaatta-taggaagtctaaacagatatgaaaaattgataca-------------aacacagacacataaacaccggtaataagtcaacaaa 31201854  T
Q  101 atagaagttattgaatgtaaccacatgtgtc 131  Q
    ||||||||| |||||||||||||||||||||    
T  31201855 atagaagttgttgaatgtaaccacatgtgtc 31201885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 31215023 - 31215086
Alignment:
Q  66 acactgacacataaacaccagtaataatttaacaaa-tagaagttattgaatgtaaccacatgt 128  Q
    |||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  31215023 acacagacacataaacaccggtaataagttaacaaaatagaagttattgaatgtaaccacatgt 31215086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 22402404 - 22402446
Alignment:
Q  99 aaatagaagttattgaatgtaaccacatgtgtcggtgtcgtgt 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  22402404 aaatagaagtgattgaatgtaaccacatgtgtcggtgtcgtgt 22402446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 31214972 - 31215021
Alignment:
Q  2 ctatgtatataattaataggaagtctaaacagatatgaaaaattgataca 51  Q
    |||||||| ||||||||||| ||||||||||||||  |||||||||||||    
T  31214972 ctatgtatgtaattaataggtagtctaaacagatacaaaaaattgataca 31215021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 27131725 - 27131669
Alignment:
Q  86 gtaataatttaacaaa-tagaagttattgaatgtaaccacatgtgtcggtgtcgtgt 141  Q
    |||||||||||| ||| | ||||| ||||||||||||||||||||| ||||||||||    
T  27131725 gtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcgtgt 27131669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 42654402 - 42654344
Alignment:
Q  81 caccagtaataatttaacaaatagaagttattgaatgtaaccacatgtgtcggtgtcgt 139  Q
    ||||||||||||||||| |||||||||| |||||||||||| |  || |||||||||||    
T  42654402 caccagtaataatttaagaaatagaagtaattgaatgtaactatgtgagtcggtgtcgt 42654344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 16047727 - 16047666
Alignment:
Q  80 acaccagtaataatttaacaaatagaagttattgaatgtaaccacatgtgtcggtgtcgtgt 141  Q
    |||||| ||||||||||| |||||||||| |||||||||||| || | || |||||||||||    
T  16047727 acaccaataataatttaagaaatagaagtgattgaatgtaactacttatgccggtgtcgtgt 16047666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 8518053 - 8518095
Alignment:
Q  99 aaatagaagttattgaatgtaaccacatgtgtcggtgtcgtgt 141  Q
    |||||||||| |||||||||||| | |||||||||||||||||    
T  8518053 aaatagaagtaattgaatgtaactaaatgtgtcggtgtcgtgt 8518095  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 2468525 - 2468469
Alignment:
Q  86 gtaataatttaacaaa-tagaagttattgaatgtaaccacatgtgtcggtgtcgtgt 141  Q
    |||||||||||| ||| | ||||| ||||||||||||||||||||| ||||||||||    
T  2468525 gtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcgtgt 2468469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 27832643 - 27832688
Alignment:
Q  98 caaatagaagttattgaatgtaaccacatgtgtcggtgtcgtgtca 143  Q
    ||||||||||| |||||||||||| |||||| |||||||| |||||    
T  27832643 caaatagaagtaattgaatgtaactacatgtatcggtgtcatgtca 27832688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 13050040 - 13049974
Alignment:
Q  78 aaacaccagtaataatttaacaaa-tagaagttattgaatgtaaccacatgtgtcggtgtcgtgtca 143  Q
    |||||||||||||||||||| ||| || |||| | ||||||||| |||||||||||| || ||||||    
T  13050040 aaacaccagtaataatttaagaaaataaaagtcaatgaatgtaatcacatgtgtcggcgttgtgtca 13049974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 14658468 - 14658522
Alignment:
Q  74 acataaacaccagtaataatttaacaaatagaagttattgaatgtaaccacatgt 128  Q
    ||||| |||||| ||||||||||| |||||||||| |||||||| ||| ||||||    
T  14658468 acatagacaccaataataatttaagaaatagaagtgattgaatgcaactacatgt 14658522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 30271679 - 30271732
Alignment:
Q  68 actgacacataaacaccagtaataatttaacaa-atagaagttattgaatgtaa 120  Q
    |||||||| |||||||||||||| |||||| || |||||||| |||||||||||    
T  30271679 actgacacgtaaacaccagtaatgatttaagaatatagaagtgattgaatgtaa 30271732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 17105251 - 17105321
Alignment:
Q  68 actgacacataaacaccagtaataatttaacaaa-tagaagttattgaatgtaaccacatgtgtcggtgtc 137  Q
    ||||||||||| |||| | ||||||||||| ||| || |||| ||||||||||||| ||| ||||||||||    
T  17105251 actgacacatagacactaataataatttaagaaaataaaagtgattgaatgtaacctcatttgtcggtgtc 17105321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 4493820 - 4493763
Alignment:
Q  64 caacactgacacataaacaccagtaataatttaacaaatagaagttattgaatgtaac 121  Q
    ||||||| ||||||| ||||||||||| |||| | |||| |||| |||||||||||||    
T  4493820 caacactaacacatacacaccagtaatcatttgagaaattgaagctattgaatgtaac 4493763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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