View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16047_low_10 (Length: 344)
Name: NF16047_low_10
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16047_low_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 50891775 - 50892108
Alignment:
| Q |
11 |
ttattctatgatgactgaatatattttattcctattacaaagtcaaaagcaaaaagaggatagtaaatattttcaataccattgagaaaatattaaccaa |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50891775 |
ttattctatgatgattgaatatattttattcctattacaaagtcaaaagcaaaaagaggatagtaaatattttcaataccattgacaaaatattaaccaa |
50891874 |
T |
|
| Q |
111 |
gcctcaaaattttgtattcaaacatatgcataaacagaaatgagaacagcattcctagtcctattcaaatcgctgttatatataaatggataaatttgaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50891875 |
gcctcaaaattttgtattcaaacatatgcataaacagaaatgagaacagcattcctagtcctattcaaatcgctgttatatataaatagataaatttgaa |
50891974 |
T |
|
| Q |
211 |
gaacaaaaaacagtgttgaaaaagaataaggaacagtagtacggattttgaataataaatatgatacattaattaactttgggcacccacagctaggtga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50891975 |
gaacaaaaaacagtgttgaaaaagaataaggaacagtagtacggattttgaataataaatatgatacattaattaactttgggcacccacagctaggtga |
50892074 |
T |
|
| Q |
311 |
ccatttataacaaaggaaagaaacaaaatggaaa |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
50892075 |
ccatttataacaaaggaaagaaacaaaatggaaa |
50892108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University