View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16047_low_15 (Length: 269)
Name: NF16047_low_15
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16047_low_15 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 16385834 - 16386075
Alignment:
| Q |
10 |
catcatcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcataacatcaatagttggttctttttcagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16385834 |
catcatcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcataacatcaatagttggttctttttcagg |
16385933 |
T |
|
| Q |
110 |
atcaattgtacacacaaatatgtcgagtcccggtaacttctcgtcggctggtaaattctcggtcataactgatcgagttatcggccgccaacggaatgct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16385934 |
atcaattgtacacacaaatatgtcgagtcccggtaacttctcgtcggccggtaaattctcggtcataactgatcgagttatcggccgccaacggaatgct |
16386033 |
T |
|
| Q |
210 |
tggtgggaaaaccacataaatgaaaaaataagctcagctagt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16386034 |
tggtgggaaaaccacataaatgaaaaaataagctcagctagt |
16386075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 11999 - 11760
Alignment:
| Q |
10 |
catcatcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcataacatcaatagttggttctttttcagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11999 |
catcatcagaaagataaatagaaagtttattagaagggtagtccattgcaatagcagaaataacagtgttcataacatcaaccgttggttctttttcagg |
11900 |
T |
|
| Q |
110 |
atcaattgtacacacaaatatgtcgagtcccggtaacttctcgtcggctggtaaattctcggtcataactgatcgagttatcggccgccaacggaatgct |
209 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||| | ||| ||||||||||||| |
|
|
| T |
11899 |
atcaatcgtacacacaaatatgtcgagtcccggtaacttctcgtcgggcggtaatttctcggtcataactgaacgatttaccagcctccaacggaatgct |
11800 |
T |
|
| Q |
210 |
tggtgggaaaaccacataaatgaaaaaataagctcagcta |
249 |
Q |
| |
|
|||| | ||||||||| |||||| | ||||| |||||||| |
|
|
| T |
11799 |
tggttgaaaaaccacaaaaatgatagaataatctcagcta |
11760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 17588986 - 17589225
Alignment:
| Q |
10 |
catcatcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcataacatcaatagttggttctttttcagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
17588986 |
catcatcagaaagataaatagaaagtttatcaggagggtaatccatagcaatagcagaaacaacagtgttcataacttctaccgttggttctttttcagg |
17589085 |
T |
|
| Q |
110 |
atcaattgtacacacaaatatgtcgagtcccggtaacttctcgtcggctggtaaattctcggtcataactgatcgagttatcggccgccaacggaatgct |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| ||||| | ||||||||||||||| ||| |
|
|
| T |
17589086 |
atcaatcgtacacacaaatatgtcgagtcccggtaacttctcttcagccggtaatttctcggtcatcactgaacgagtcaccggccgccaacggaacgct |
17589185 |
T |
|
| Q |
210 |
tggtgggaaaaccacataaatgaaaaaataagctcagcta |
249 |
Q |
| |
|
|||| | ||| |||||||||||| | ||||| |||||||| |
|
|
| T |
17589186 |
tggttgaaaacccacataaatgatagaataatctcagcta |
17589225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 270390 - 270149
Alignment:
| Q |
10 |
catcatcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcataacatcaatagttggttctttttcagg |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
270390 |
catcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgttggttctttttcagg |
270291 |
T |
|
| Q |
110 |
atcaattgtacacacaaatatgtcgagtcccggtaacttctcgtcggctggtaaattctcggtcataactgatcgagttatcggccgccaacggaatgct |
209 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||| || |||||| | | ||||||||| ||| ||||| |
|
|
| T |
270290 |
atcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgaccattaccgatcgactcaccggccgccatcggtatgct |
270191 |
T |
|
| Q |
210 |
tggtgggaaaaccacataaatgaaaaaataagctcagctagt |
251 |
Q |
| |
|
|||| | ||||||||| | ||| | |||||||||||||||| |
|
|
| T |
270190 |
tggttgaaaaaccacaagactgatagaataagctcagctagt |
270149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University