View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16047_low_3 (Length: 589)
Name: NF16047_low_3
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16047_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 92 - 570
Target Start/End: Complemental strand, 36606650 - 36606168
Alignment:
| Q |
92 |
atgattaattagcttttctgttttaaacctcgcacgttcaatagaatcaacaacagccaaaccaaagttgtcgttacctttttgttcgtcagctccgacg |
191 |
Q |
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| T |
36606650 |
atgattaattagcttttctgttttaaacctcgcacgttcaatagaatcaacaacaaccaaaccaaggttgtcgttacctttttgttcgtcagctccgacg |
36606551 |
T |
|
| Q |
192 |
gttggttttgaacatgaagctgagttactgagttagtcggaactaagtttgataaattttcttctacgannnnnnnccagtttgggaagatgaagataaa |
291 |
Q |
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| T |
36606550 |
gttggttttgaacatgaagctgagttactgagtgagtcagaactaagtttgataaattttcttctacgatttttttccagtttgggaagatgaagataaa |
36606451 |
T |
|
| Q |
292 |
gtgggtaagtcgattctagatttgaagaattttaatggattgtaattaactgttaaacaattgtgttgttgttgatgatt----ataatattatttgtca |
387 |
Q |
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| T |
36606450 |
ttgggtaagtcgattctagatttgaagaattttaatggattgtaattaactgttaaacaattgtgttgttgttgatgattataaataatattatttgtca |
36606351 |
T |
|
| Q |
388 |
aagaattctgttggannnnnnnncatgaattttgggattgtggtatgaaggtttcagtttgtgaagaaacaagaacatgaacacaatgaatgtgtgtact |
487 |
Q |
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| T |
36606350 |
aagaactctgttggattttttttcatgaattttgggattgtggtatgaaggtttgagtttgtgaagaaacaagaacatgaacacaattaatgtgtgtact |
36606251 |
T |
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| Q |
488 |
cggtttctgaaaaagtttaatgaaccttatatcacaagggacaaaaccaaaaatgctctatattacacaggtaaaacactatt |
570 |
Q |
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| T |
36606250 |
gggtttgtgaaaaagtttaatgaaccctatattgcaggggacaaaaccaaaaatgctttatattacacggataaaacactatt |
36606168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 36606696 - 36606659
Alignment:
| Q |
11 |
cacagagagaaataataacaacactacccaaattaacc |
48 |
Q |
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| T |
36606696 |
cacagagagaaataataacaacactacccaaattaacc |
36606659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 2713821 - 2713763
Alignment:
| Q |
92 |
atgattaattagcttttctgttttaaacctcgcacgttcaatagaatcaacaacagcca |
150 |
Q |
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| T |
2713821 |
atgattaattagttttcctgttttcaacctcgcaatttcaatagaatcaacaacagcca |
2713763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 567
Target Start/End: Original strand, 3370232 - 3370269
Alignment:
| Q |
530 |
aaaaccaaaaatgctctatattacacaggtaaaacact |
567 |
Q |
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|||| |||||||||||||||||||| |||||||||||| |
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| T |
3370232 |
aaaatcaaaaatgctctatattacaaaggtaaaacact |
3370269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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