View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16047_low_4 (Length: 523)

Name: NF16047_low_4
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16047_low_4
NF16047_low_4
[»] chr2 (20 HSPs)
chr2 (10-506)||(10618544-10619041)
chr2 (421-495)||(44439249-44439324)
chr2 (328-421)||(680203-680296)
chr2 (358-493)||(4894099-4894244)
chr2 (427-491)||(42982544-42982608)
chr2 (327-421)||(36307044-36307139)
chr2 (429-506)||(3476452-3476530)
chr2 (427-493)||(42740975-42741041)
chr2 (327-415)||(11759770-11759859)
chr2 (421-478)||(33961996-33962053)
chr2 (440-496)||(12037056-12037112)
chr2 (331-366)||(5973619-5973654)
chr2 (327-390)||(13238913-13238976)
chr2 (427-493)||(3352074-3352140)
chr2 (427-477)||(16488342-16488392)
chr2 (440-506)||(22535983-22536049)
chr2 (329-365)||(4007116-4007152)
chr2 (329-365)||(37745811-37745847)
chr2 (327-375)||(38129424-38129472)
chr2 (342-413)||(42774783-42774854)
[»] chr6 (20 HSPs)
chr6 (421-507)||(1485161-1485247)
chr6 (427-506)||(2234500-2234579)
chr6 (421-505)||(30926793-30926878)
chr6 (380-507)||(34620870-34621006)
chr6 (380-507)||(34748307-34748443)
chr6 (327-421)||(1499979-1500074)
chr6 (421-495)||(34898691-34898766)
chr6 (421-481)||(9505780-9505840)
chr6 (430-478)||(10874507-10874555)
chr6 (329-375)||(46201-46247)
chr6 (427-481)||(31305868-31305922)
chr6 (340-404)||(7953079-7953144)
chr6 (329-412)||(765298-765382)
chr6 (420-506)||(852517-852603)
chr6 (329-375)||(20871627-20871673)
chr6 (429-506)||(5724653-5724730)
chr6 (427-464)||(34027438-34027475)
chr6 (340-368)||(1349436-1349464)
chr6 (329-365)||(3436796-3436832)
chr6 (441-493)||(3436917-3436969)
[»] chr3 (30 HSPs)
chr3 (329-490)||(35264324-35264495)
chr3 (429-506)||(35058346-35058423)
chr3 (421-506)||(36302168-36302253)
chr3 (331-506)||(37334949-37335134)
chr3 (421-506)||(44958621-44958706)
chr3 (434-506)||(40147878-40147950)
chr3 (335-421)||(584712-584799)
chr3 (420-481)||(51285580-51285641)
chr3 (421-465)||(46853549-46853593)
chr3 (333-388)||(50427184-50427240)
chr3 (423-489)||(3776524-3776590)
chr3 (421-506)||(30301013-30301099)
chr3 (329-410)||(31766160-31766242)
chr3 (329-404)||(42644302-42644379)
chr3 (327-359)||(49356304-49356336)
chr3 (440-495)||(52364047-52364102)
chr3 (452-506)||(7717367-7717421)
chr3 (421-471)||(23187865-23187915)
chr3 (421-495)||(25359589-25359663)
chr3 (428-498)||(27499383-27499453)
chr3 (328-421)||(32112073-32112167)
chr3 (437-506)||(41115392-41115462)
chr3 (344-409)||(52925551-52925617)
chr3 (340-412)||(1441331-1441404)
chr3 (344-404)||(25577696-25577757)
chr3 (329-374)||(30958164-30958209)
chr3 (329-374)||(30973976-30974021)
chr3 (328-365)||(49158656-49158693)
chr3 (327-375)||(42913180-42913228)
chr3 (328-368)||(44489652-44489692)
[»] chr7 (19 HSPs)
chr7 (377-495)||(41788312-41788439)
chr7 (431-495)||(27571858-27571922)
chr7 (434-507)||(5489874-5489947)
chr7 (420-493)||(30182310-30182383)
chr7 (427-496)||(38123687-38123756)
chr7 (329-421)||(40491657-40491750)
chr7 (427-506)||(45005005-45005084)
chr7 (343-394)||(39734639-39734691)
chr7 (344-421)||(40795917-40795995)
chr7 (329-425)||(42481803-42481900)
chr7 (427-507)||(1410946-1411026)
chr7 (329-404)||(35105254-35105330)
chr7 (328-405)||(48158913-48158991)
chr7 (421-495)||(597961-598034)
chr7 (442-492)||(28725088-28725138)
chr7 (440-481)||(15050303-15050344)
chr7 (427-500)||(41386836-41386909)
chr7 (335-390)||(597862-597918)
chr7 (380-412)||(35222074-35222106)
[»] chr1 (32 HSPs)
chr1 (421-507)||(10324953-10325039)
chr1 (329-489)||(3515820-3515979)
chr1 (421-493)||(20026179-20026251)
chr1 (429-481)||(33693031-33693083)
chr1 (427-493)||(28083909-28083975)
chr1 (434-496)||(47892416-47892478)
chr1 (327-375)||(11817228-11817276)
chr1 (431-506)||(6021789-6021864)
chr1 (421-496)||(28287351-28287426)
chr1 (327-365)||(22548210-22548248)
chr1 (329-367)||(47899387-47899425)
chr1 (427-496)||(11049245-11049314)
chr1 (426-471)||(29759632-29759677)
chr1 (440-493)||(48549046-48549099)
chr1 (329-404)||(13344837-13344913)
chr1 (427-495)||(24587905-24587976)
chr1 (327-367)||(38512453-38512493)
chr1 (324-376)||(49537194-49537246)
chr1 (421-463)||(213552-213594)
chr1 (427-496)||(6574175-6574245)
chr1 (421-499)||(7790657-7790735)
chr1 (439-505)||(29964085-29964151)
chr1 (427-493)||(34387714-34387780)
chr1 (329-421)||(7524192-7524285)
chr1 (345-421)||(15514998-15515075)
chr1 (421-462)||(17284125-17284166)
chr1 (327-404)||(45557398-45557475)
chr1 (421-493)||(1514341-1514413)
chr1 (427-475)||(4458592-4458640)
chr1 (454-506)||(10325081-10325133)
chr1 (327-367)||(35548923-35548963)
chr1 (329-365)||(40643033-40643069)
[»] chr4 (29 HSPs)
chr4 (421-481)||(33843987-33844047)
chr4 (421-481)||(37439155-37439215)
chr4 (427-506)||(2635148-2635227)
chr4 (427-506)||(32818391-32818470)
chr4 (327-421)||(43868215-43868310)
chr4 (342-506)||(55927696-55927870)
chr4 (440-481)||(8330126-8330167)
chr4 (427-493)||(2206364-2206431)
chr4 (421-472)||(4243406-4243457)
chr4 (418-472)||(33843702-33843756)
chr4 (329-410)||(38740287-38740369)
chr4 (427-492)||(1048716-1048781)
chr4 (420-481)||(10185204-10185265)
chr4 (421-506)||(22250211-22250296)
chr4 (427-499)||(30357504-30357576)
chr4 (344-412)||(36639883-36639951)
chr4 (327-394)||(12926928-12926995)
chr4 (421-495)||(18597035-18597110)
chr4 (431-478)||(20712664-20712710)
chr4 (429-510)||(2206498-2206580)
chr4 (427-477)||(2206850-2206900)
chr4 (431-493)||(9064229-9064291)
chr4 (327-365)||(20911810-20911848)
chr4 (440-506)||(51093243-51093309)
chr4 (325-362)||(25405729-25405766)
chr4 (421-465)||(7066596-7066640)
chr4 (421-493)||(17714666-17714738)
chr4 (327-367)||(24364103-24364143)
chr4 (327-375)||(34155819-34155867)
[»] scaffold0361 (1 HSPs)
scaffold0361 (346-495)||(14044-14202)
[»] chr8 (25 HSPs)
chr8 (327-421)||(9461450-9461544)
chr8 (427-496)||(26100167-26100236)
chr8 (329-421)||(32927971-32928064)
chr8 (326-422)||(3206135-3206231)
chr8 (427-507)||(13418840-13418920)
chr8 (425-495)||(4554330-4554401)
chr8 (330-392)||(7602042-7602105)
chr8 (329-422)||(10368043-10368137)
chr8 (427-493)||(13384675-13384741)
chr8 (327-365)||(18355760-18355798)
chr8 (327-375)||(1820464-1820512)
chr8 (327-375)||(1854909-1854957)
chr8 (431-467)||(3478728-3478764)
chr8 (331-375)||(4336571-4336615)
chr8 (440-496)||(15677850-15677906)
chr8 (427-502)||(38868487-38868562)
chr8 (346-415)||(4950568-4950638)
chr8 (329-375)||(26559864-26559910)
chr8 (327-365)||(35550309-35550347)
chr8 (329-421)||(18123305-18123398)
chr8 (341-421)||(28805254-28805335)
chr8 (343-410)||(1373081-1373149)
chr8 (421-481)||(4336640-4336700)
chr8 (345-384)||(30706283-30706323)
chr8 (335-422)||(38516328-38516416)
[»] chr5 (14 HSPs)
chr5 (329-410)||(14299416-14299498)
chr5 (420-481)||(24306110-24306171)
chr5 (420-481)||(24367145-24367206)
chr5 (440-499)||(3738142-3738201)
chr5 (435-502)||(34250380-34250447)
chr5 (427-506)||(42858093-42858172)
chr5 (327-374)||(4848064-4848111)
chr5 (467-506)||(14299726-14299765)
chr5 (327-365)||(2124244-2124282)
chr5 (424-493)||(18585325-18585394)
chr5 (440-481)||(36927744-36927785)
chr5 (328-376)||(4975053-4975100)
chr5 (344-403)||(5465398-5465458)
chr5 (441-493)||(6951340-6951392)


Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 10 - 506
Target Start/End: Original strand, 10618544 - 10619041
Alignment:
Q  10 catcatcaacctctgcaacaccgcagaacttgcattcatctgattctgaagcaacggccccaaacaagtccccggatgaactgcaaccacatccacaccg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10618544 catcatcaacctctgcaacaccgcagaacttgcattcatctgattctgaagcaacggccccaaacaagtccctggatgaactgcaaccacatccacaccg 10618643  T
Q  110 ctgtgtttctcacaaaactcccacgccgccttctccgcctccgttttcgacacgggataccacttccccctcaacttacagtactcaacatcagtccacg 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10618644 ctgtgtttctcacaaaactcccacgccaccttctccgcctccgttttcgacacgggataccacttccccctcaacttacagtactcaacatcagtccacg 10618743  T
Q  210 acccctcgtcaatcgccttgttttccggccaattagggtttggtacctgttggagggacaaatttacttgtacttttataaataaataaatatgcaagaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10618744 acccctcgtcaatcgccttgttttccggccaattagggtttggtacctgttggagggacaaatttacttgtacttttataaataaataaatatgcaagaa 10618843  T
Q  310 tggctaaaagtatgtttaaaattgatttttagtgaattgattttgtaaaattgattctagct-aaaatgaattgaaggtaaagtgaattatgtttgtata 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10618844 tggctaaaagtatgtttaaaattgatttttagtgaattgattttgtaaaattgattctagctaaaaatgaattgaaggtaaagtgaattatgtttgtata 10618943  T
Q  409 catttatataaaaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10618944 catttatataaaaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 10619041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 495
Target Start/End: Complemental strand, 44439324 - 44439249
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa-ctagaatcaattct 495  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| || || |||||||||  |||||||||||||    
T  44439324 aacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattct 44439249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 680203 - 680296
Alignment:
Q  328 aaattgatttttagtgaattgattttgtaaaattgattctagctaaaatgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    ||||||||||| |||||||||||| |||||| |||| |||  ||||| ||| ||||||||||||||  || |||||| ||||||| || |||||    
T  680203 aaattgattttgagtgaattgattatgtaaagttgagtctgtctaaattgagttgaaggtaaagtgttttgtgtttgcatacattcatgtaaaa 680296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 493
Target Start/End: Original strand, 4894099 - 4894244
Alignment:
Q  358 aattgattctagctaaaatgaa-ttgaaggtaaagtgaattatgtttgtatacatttatataaa---------aacaacaaatttgagtgttaaaatcaa 447  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||  ||||||| || ||||         || || |||||||||| | | ||||||    
T  4894099 aattgattctagctaaaattaagttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatttgagtataataatcaa 4894198  T
Q  448 ttatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    |||||||||||||||||   |||||||| ||||| | |||||||||    
T  4894199 ttatagaatcaaaagctacgatttctagtttcaagttgaatcaatt 4894244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 491
Target Start/End: Complemental strand, 42982608 - 42982544
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaa 491  Q
    ||||||| |||| |||||||||| | ||||||||||||  ||||||||||||||| |||||||||    
T  42982608 aaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 36307139 - 36307044
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    ||||||||| || |||||||||||| ||||||||||||| | | ||||| ||| ||||| ||||||| | | ||||||||||  ||||||||||||    
T  36307139 aaaattgatcttgagtgaattgattatgtaaaattgattatggataaaagtgagttgaacgtaaagtaattgatgtttgtatgtatttatataaaa 36307044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 506
Target Start/End: Original strand, 3476452 - 3476530
Alignment:
Q  429 atttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa-ctagaatcaattctaaaggcaaaat 506  Q
    |||||| ||| ||||| |||| ||||||||||||||||||||| |||||| ||  |||||||||||||  |||||||||    
T  3476452 atttgaatgtaaaaataaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaat 3476530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 493
Target Start/End: Complemental strand, 42741041 - 42740975
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    |||||||||||| |||||||||| ||||||||||||||  || |  ||||||||| |||||||||||    
T  42741041 aaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaatt 42740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 11759770 - 11759859
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttat 415  Q
    |||||||| ||| |||||||||||||||||||||||||| |   ||||| ||| ||||||||||| ||  || |||||||||||| ||||    
T  11759770 aaaattgagtttgagtgaattgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgtgtttgtatacacttat 11759859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 33961996 - 33962053
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagctt 478  Q
    ||||| |||||||||| | |||||||||||||||||||||| ||| |||||| |||||    
T  33961996 aacaataaatttgagtctaaaaatcaattatagaatcaaaaactccaatttcaagctt 33962053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 496
Target Start/End: Complemental strand, 12037112 - 12037056
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattcta 496  Q
    |||||||||| ||||||||||||||  || || ||| ||||||||||||||||||||    
T  12037112 aaaatcaattgtagaatcaaaagctacaaattttagtttcaactagaatcaattcta 12037056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 366
Target Start/End: Original strand, 5973619 - 5973654
Alignment:
Q  331 ttgatttttagtgaattgattttgtaaaattgattc 366  Q
    |||||||||| |||||||||||||||||||||||||    
T  5973619 ttgatttttaatgaattgattttgtaaaattgattc 5973654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 13238976 - 13238913
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaatgaattgaaggtaaa 390  Q
    |||||||||||| | |||||| ||||||||||||||||| ||| |||||  |||| ||||||||    
T  13238976 aaaattgattttgattgaattcattttgtaaaattgattttagttaaaagcaatttaaggtaaa 13238913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 493
Target Start/End: Complemental strand, 3352140 - 3352074
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    ||||||| |||| |||||||||||||||||||||||||  |||| | | |||||| || ||||||||    
T  3352140 aaatttgtgtgtgaaaatcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaatt 3352074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 16488392 - 16488342
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagct 477  Q
    |||||||| ||||| |||||||| ||||||||| ||||| |||||||||||    
T  16488392 aaatttgattgttataatcaattctagaatcaacagctccaatttctagct 16488342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 22536049 - 22535983
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||| |||| || |||||||||||  || |||||  ||||| ||||||||||||||||||||||||    
T  22536049 aaaattaattctaaaatcaaaagcttcaaattctaaattcaagtagaatcaattctaaaggcaaaat 22535983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 4007116 - 4007152
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgatt 365  Q
    |||||||||| |||| |||||||||||||||||||||    
T  4007116 aattgattttaagtggattgattttgtaaaattgatt 4007152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 37745811 - 37745847
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgatt 365  Q
    |||||||||| |||||||||||| |||||||||||||    
T  37745811 aattgattttgagtgaattgattatgtaaaattgatt 37745847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 38129424 - 38129472
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    |||||||||||| | |||||||||| |||||||| ||||||| ||||||    
T  38129424 aaaattgattttgaatgaattgattctgtaaaatggattctaactaaaa 38129472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 413
Target Start/End: Original strand, 42774783 - 42774854
Alignment:
Q  342 tgaattgattttgtaaaattgattctagct-aaaatgaattgaaggtaaagtgaattatgtttgtatacattt 413  Q
    ||||||||||||||||||||||||||  || ||||| | ||||||||||| ||  ||||||||| ||||||||    
T  42774783 tgaattgattttgtaaaattgattctgactaaaaataagttgaaggtaaaatggtttatgtttg-atacattt 42774854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 421 - 507
Target Start/End: Original strand, 1485161 - 1485247
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatt 507  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  1485161 aacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaagtagaatcaattctaaaggcaaaatt 1485247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 2234579 - 2234500
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||||||||||||||||||| ||||||||||||||  | ||| ||||||||| | ||||||||| | ||||||||||    
T  2234579 aaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagttgaatcaattttgaaggcaaaat 2234500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 505
Target Start/End: Original strand, 30926793 - 30926878
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa-ctagaatcaattctaaaggcaaaa 505  Q
    ||||| |||||||||||| |||||||||| |||||| |||| ||| |||||||||||||||  ||||||| ||||||||| |||||    
T  30926793 aacaataaatttgagtgtaaaaatcaattctagaataaaaaactccaatttctagcttcaagttagaatccattctaaagccaaaa 30926878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 507
Target Start/End: Complemental strand, 34621006 - 34620870
Alignment:
Q  380 ttgaaggtaaagtgaattatgtttgtatacatttatataaaa---------acaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatt 470  Q
    ||||||||||||||| ||||||||| |||||||||| |||||         | || |||||| ||||| |||||||||| |||||||| ||||| | |||    
T  34621006 ttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatt 34620907  T
Q  471 tctagcttcaactagaatcaattctaaaggcaaaatt 507  Q
    ||||||||||  ||||||||||||   ||||||||||    
T  34620906 tctagcttcatgtagaatcaattccggaggcaaaatt 34620870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 507
Target Start/End: Complemental strand, 34748443 - 34748307
Alignment:
Q  380 ttgaaggtaaagtgaattatgtttgtatacatttatataaaa---------acaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatt 470  Q
    ||||||||||||||| ||||||||| |||||||||| |||||         | || |||||| ||||| |||||||||| |||||||| ||||| | |||    
T  34748443 ttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatt 34748344  T
Q  471 tctagcttcaactagaatcaattctaaaggcaaaatt 507  Q
    ||||||||||  ||||||||||||   ||||||||||    
T  34748343 tctagcttcatgtagaatcaattccggaggcaaaatt 34748307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 1500074 - 1499979
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    |||||||||||| | |||||||||||||||||||||||| | |||||||  || ||||  ||||| ||| ||||||||| |||||||||| |||||    
T  1500074 aaaattgattttgactgaattgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtttgaatacatttatgtaaaa 1499979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 495
Target Start/End: Complemental strand, 34898766 - 34898691
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaag-ctctaatttctagcttcaactagaatcaattct 495  Q
    ||||| ||||| ||||||||||||||||| |||||| ||||  ||||||||||||||||||| ||||||| |||||    
T  34898766 aacaataaattcgagtgttaaaatcaattctagaataaaaaaactctaatttctagcttcaagtagaatcgattct 34898691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 9505840 - 9505780
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    ||||| |||||||||| | ||||||||| |||||||||||||||| |||||||| ||||||    
T  9505840 aacaataaatttgagtttaaaaatcaatcatagaatcaaaagctccaatttctatcttcaa 9505780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 10874555 - 10874507
Alignment:
Q  430 tttgagtgttaaaatcaattatagaatcaaaagctctaatttctagctt 478  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  10874555 tttgaatgtaaaaatcaattctagaatcaaaagctctaatttctagctt 10874507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 46201 - 46247
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||||    
T  46201 aattgattttgagtgaattgattctgtaaaattgattctaactaaaa 46247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 31305868 - 31305922
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||| |||||||||    
T  31305868 aaatttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaa 31305922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 7953144 - 7953079
Alignment:
Q  340 agtgaattgattttgtaaaattgattctagctaaaat-gaattgaaggtaaagtgaattatgtttg 404  Q
    |||||||||||| || |||||||||||| || ||||| || ||||||||||||||| |||||||||    
T  7953144 agtgaattgattatgaaaaattgattctggccaaaattgagttgaaggtaaagtgatttatgtttg 7953079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 765298 - 765382
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatt 412  Q
    |||||||||| |||||| ||||| |||||||||||||||| |||||| | | ||||| ||||||||| || |||||  |||||||    
T  765298 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgatttgtgtttccatacatt 765382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 506
Target Start/End: Complemental strand, 852603 - 852517
Alignment:
Q  420 aaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    |||||| | ||||| |||| |||||||||| |||||||| || ||  ||||||||||||||| | ||||||||| |  |||||||||    
T  852603 aaacaatacatttgggtgtaaaaatcaattctagaatcagaacctacaatttctagcttcaagttgaatcaattatggaggcaaaat 852517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 20871673 - 20871627
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    |||||||||||| |||||||||| ||||||||||||| ||| |||||    
T  20871673 aattgatttttattgaattgattgtgtaaaattgattttagataaaa 20871627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 506
Target Start/End: Original strand, 5724653 - 5724730
Alignment:
Q  429 atttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||| |||| ||||||||||||||||| ||||| |  || | |||||||||| ||||||||||| |  |||||||||    
T  5724653 atttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaattttggaggcaaaat 5724730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 34027438 - 34027475
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagct 464  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  34027438 aaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 368
Target Start/End: Complemental strand, 1349464 - 1349436
Alignment:
Q  340 agtgaattgattttgtaaaattgattcta 368  Q
    |||||||||||||||||||||||||||||    
T  1349464 agtgaattgattttgtaaaattgattcta 1349436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 3436796 - 3436832
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgatt 365  Q
    |||||||||||||||| |||||||| |||||||||||    
T  3436796 aattgatttttagtgagttgattttataaaattgatt 3436832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 3436917 - 3436969
Alignment:
Q  441 aaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    |||||||||||||||||||||| |  || || ||| |||||||||||||||||    
T  3436917 aaatcaattatagaatcaaaagttacaaattatagattcaactagaatcaatt 3436969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 329 - 490
Target Start/End: Original strand, 35264324 - 35264495
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaaa----- 422  Q
    |||||||||| |||||||||||| ||||||||||||| || | |||| ||| ||||| ||||||||| |||||||||  |||||| || ||||||         
T  35264324 aattgattttgagtgaattgattctgtaaaattgattgtaaccaaaagtgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgact 35264423  T
Q  423 ----caacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatca 490  Q
        ||| |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  35264424 tgaacaataaatttaagtgttaaaatcaattctagaatcaaaagctctaatttctagtttcaagtagaatca 35264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 429 - 506
Target Start/End: Complemental strand, 35058423 - 35058346
Alignment:
Q  429 atttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||  |||||||||    
T  35058423 atttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagtagaatcaattcttgaggcaaaat 35058346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 36302253 - 36302168
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||| |||||| |||| ||||||||||| || |||||||| ||| ||| ||||||||||| ||||||||| ||| ||||||||||    
T  36302253 aacaataaatttaagtgctaaaatcaattctaaaatcaaaatctccaatctctagcttcaaatagaatcaactctgaaggcaaaat 36302168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 506
Target Start/End: Original strand, 37334949 - 37335134
Alignment:
Q  331 ttgatttttagtgaattgattttgtaaaattgattctagctaaaat-gaattgaaggtaaagtgaattatgtttgtatacatttatataaa--------- 420  Q
    |||||||| |||||||||||| | ||||||||||||   ||||||| || ||||||||||||||| |||||| || ||||||| |||||||             
T  37334949 ttgattttaagtgaattgattatataaaattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttg 37335048  T
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    |||||  ||||  ||||| |||||||||| ||||||||||||||   ||||||| |||| | || ||||||||||  |||||||||    
T  37335049 aacaatgaattcaagtgtaaaaatcaattctagaatcaaaagctacgatttctaacttctagtaaaatcaattctcgaggcaaaat 37335134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 44958621 - 44958706
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||| ||| |||||||||||||||| || ||||||||||||||| |||||||||| || | ||||||||| |||  |||||||||    
T  44958621 aacaataaagttgagtgttaaaatcatttctagaatcaaaagctccaatttctagcatcgagtagaatcaactctggaggcaaaat 44958706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 506
Target Start/End: Original strand, 40147878 - 40147950
Alignment:
Q  434 agtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    |||||| ||||||||| ||||||||||||||| || ||||||||| || ||||||||||||| ||| ||||||    
T  40147878 agtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaattctgaagacaaaat 40147950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 421
Target Start/End: Original strand, 584712 - 584799
Alignment:
Q  335 tttttagtgaattgattttgtaaaattgattctagctaaaatgaa-ttgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    |||| |||||||||||||||||||||||||| |||||||||| || |||||| ||||  || || |||||| |||||||||| |||||    
T  584712 ttttgagtgaattgattttgtaaaattgattttagctaaaattaagttgaagctaaatggatttctgtttggatacatttatgtaaaa 584799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 481
Target Start/End: Complemental strand, 51285641 - 51285580
Alignment:
Q  420 aaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    ||||||||||||||||||  |||||||||| |||||||||||||| | |||| |||||||||    
T  51285641 aaacaacaaatttgagtgcaaaaatcaattctagaatcaaaagctgtgatttttagcttcaa 51285580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 46853549 - 46853593
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctc 465  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||    
T  46853549 aacaataaatttgagtgttaaaatcaattctagaatcaaaagctc 46853593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 50427240 - 50427184
Alignment:
Q  333 gatttttagtgaattgattttgtaaaattgattctagct-aaaatgaattgaaggta 388  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  50427240 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggta 50427184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 3776590 - 3776524
Alignment:
Q  423 caacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatc 489  Q
    |||||||||||||||| ||||| |||| |||||||| |||||  ||||||||| ||||| |||||||    
T  3776590 caacaaatttgagtgtaaaaattaattctagaatcagaagctacaatttctagattcaagtagaatc 3776524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 30301013 - 30301099
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaa-tcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||| ||||||||||||||||| ||||| ||||| | |||| ||| ||||||||||||||| |||| |||||| |  |||||||||    
T  30301013 aacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttcaaatagagtcaattttggaggcaaaat 30301099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 410
Target Start/End: Original strand, 31766160 - 31766242
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtataca 410  Q
    |||||||||| | |||||||||||||||||||| ||| | | ||||| ||| |||||| |||||||| ||||||||| |||||    
T  31766160 aattgattttgaatgaattgattttgtaaaattaattttggataaaagtgagttgaagttaaagtgatttatgtttggataca 31766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 42644379 - 42644302
Alignment:
Q  329 aattgatttttagtgaattgattttgt-aaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttg 404  Q
    |||||||||| |||||||||||||| | |||||||||| ||| ||||| ||| ||||| ||||||||| |||||||||    
T  42644379 aattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttg 42644302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 49356304 - 49356336
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaa 359  Q
    |||||||||||||||||||||||||||||||||    
T  49356304 aaaattgatttttagtgaattgattttgtaaaa 49356336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 495
Target Start/End: Complemental strand, 52364102 - 52364047
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattct 495  Q
    ||||||||||||||||||||||||| ||| |  ||||||||| ||||| |||||||    
T  52364102 aaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattct 52364047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 506
Target Start/End: Original strand, 7717367 - 7717421
Alignment:
Q  452 agaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||| |||||  ||||||||||||||| |||||||||||||  |||||||||    
T  7717367 agaatcagaagctacaatttctagcttcaagtagaatcaattctggaggcaaaat 7717421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 471
Target Start/End: Complemental strand, 23187915 - 23187865
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaattt 471  Q
    |||||||||||||||||| ||| |||||| |||||| |||||||| |||||    
T  23187915 aacaacaaatttgagtgtaaaattcaattctagaattaaaagctccaattt 23187865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 25359589 - 25359663
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattct 495  Q
    ||||| |||| || |||| ||||||||||||||||| |||| ||  || ||||| |||||| |||||||||||||    
T  25359589 aacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaacttcaagtagaatcaattct 25359663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 498
Target Start/End: Original strand, 27499383 - 27499453
Alignment:
Q  428 aatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaa 498  Q
    ||||| ||| |||||||||||| |||||| |||||||  |||||||| ||||||| ||| |||||| ||||    
T  27499383 aatttaagtattaaaatcaattttagaattaaaagcttcaatttctaacttcaacaagagtcaattttaaa 27499453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 32112167 - 32112073
Alignment:
Q  328 aaattgatttttagtgaattgattttgtaaaattgattctagct-aaaatgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    ||||||||||| |||||||||||| ||||||||||||| | | | ||||||| ||||| | ||||| | ||||||||| ||  |||||| |||||    
T  32112167 aaattgattttgagtgaattgattatgtaaaattgattatggataaaaatgagttgaatgaaaagtaatttatgtttggatttatttatgtaaaa 32112073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 506
Target Start/End: Original strand, 41115392 - 41115462
Alignment:
Q  437 gttaaaatcaattatagaatc-aaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||||||||| ||||| | |||||||  || |||||||||||| |||||||||||||| | |||||||    
T  41115392 gttaaaatcaattgtagaagccaaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaat 41115462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 52925551 - 52925617
Alignment:
Q  344 aattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatac 409  Q
    ||||||||||||||||||||||||  |||||| ||| ||||| ||||||||  ||||||||| ||||    
T  52925551 aattgattttgtaaaattgattctcactaaaattgagttgaaagtaaagtggtttatgtttggatac 52925617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 1441331 - 1441404
Alignment:
Q  340 agtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatt 412  Q
    |||||||| |||||||||||||||||||  |||||| ||| ||||| ||||||||| || |||||  |||||||    
T  1441331 agtgaattaattttgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgatttgtgtttagatacatt 1441404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 25577696 - 25577757
Alignment:
Q  344 aattgattttgtaaaattgattctagctaaaat-gaattgaaggtaaagtgaattatgtttg 404  Q
    |||||||||||| |||||||||| || |||| | |||||||||||||||| | |||||||||    
T  25577696 aattgattttgtgaaattgattcaagataaacttgaattgaaggtaaagttatttatgtttg 25577757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 30958209 - 30958164
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaa 374  Q
    |||||||||| | |||||||||||||||||||||||| | ||||||    
T  30958209 aattgattttgaatgaattgattttgtaaaattgattttggctaaa 30958164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 30974021 - 30973976
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaa 374  Q
    |||||||||| | |||||||||||||||||||||||| | ||||||    
T  30974021 aattgattttgaatgaattgattttgtaaaattgattttggctaaa 30973976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 49158693 - 49158656
Alignment:
Q  328 aaattgatttttagtgaattgattttgtaaaattgatt 365  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  49158693 aaattgattttgaatgaattgattttgtaaaattgatt 49158656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 42913228 - 42913180
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    |||||||||||| |||||||||||| | ||||||| |||||| ||||||    
T  42913228 aaaattgattttgagtgaattgattgtataaaattaattctaactaaaa 42913180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 44489692 - 44489652
Alignment:
Q  328 aaattgatttttagtgaattgattttgtaaaattgattcta 368  Q
    ||||||||||| |||||||||||  ||||||||||||||||    
T  44489692 aaattgattttgagtgaattgataatgtaaaattgattcta 44489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 377 - 495
Target Start/End: Complemental strand, 41788439 - 41788312
Alignment:
Q  377 gaattgaaggtaaagtgaattatgtttgtatacatttatataaaa---------acaacaaatttgagtgttaaaatcaattatagaatcaaaagctcta 467  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||         ||| ||||||||||||||||||||||||||||| ||||||| |  |    
T  41788439 gaattgaaggtaaagtgatttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattatagactcaaaagtttca 41788340  T
Q  468 atttctagcttcaactagaatcaattct 495  Q
    ||||||||||| || |||||||||||||    
T  41788339 atttctagctttaagtagaatcaattct 41788312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 431 - 495
Target Start/End: Complemental strand, 27571922 - 27571858
Alignment:
Q  431 ttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattct 495  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||||||    
T  27571922 ttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatcaattct 27571858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 434 - 507
Target Start/End: Original strand, 5489874 - 5489947
Alignment:
Q  434 agtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatt 507  Q
    ||||||||||||||||||| |||||||||||| |||||||||| |||| ||||||||||| |  ||||||||||    
T  5489874 agtgttaaaatcaattatataatcaaaagctccaatttctagcatcaagtagaatcaattttggaggcaaaatt 5489947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 493
Target Start/End: Original strand, 30182310 - 30182383
Alignment:
Q  420 aaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    |||||| |||||||||||| ||||| |||| ||||||||||||||  ||||| ||||||||| |||||||||||    
T  30182310 aaacaataaatttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaagtagaatcaatt 30182383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 38123687 - 38123756
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattcta 496  Q
    |||||||||||| |||||||||| |||||| | |||||  ||||||||||||||| ||||||||||||||    
T  38123687 aaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttcaagtagaatcaattcta 38123756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 421
Target Start/End: Complemental strand, 40491750 - 40491657
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    |||||||||| |||||||||||| ||||||||||||| |  |||||| ||| ||||||||||||||| |||| |||| ||||||| || |||||    
T  40491750 aattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaa 40491657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 45005084 - 45005005
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||||||| ||| ||||||| || |||||||  ||| ||||| ||||||||| ||||||||||||| ||||||||||    
T  45005084 aaatttgagtgctaagatcaattctataatcaaagcctccaatttttagcttcaagtagaatcaattctgaaggcaaaat 45005005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 394
Target Start/End: Original strand, 39734639 - 39734691
Alignment:
Q  343 gaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtga 394  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  39734639 gaattgattttgtaaaattgattctagctaaaactgagtttaaggtaaagtga 39734691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 40795917 - 40795995
Alignment:
Q  344 aattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    |||||||||||||||||||||  ||| ||||| ||||||||||||||||||  ||||| ||| ||||||| || |||||    
T  40795917 aattgattttgtaaaattgatgttaggtaaaaatgaattgaaggtaaagtggtttatgattggatacattcatgtaaaa 40795995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 42481803 - 42481900
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattct-agctaaaatgaattgaaggtaaagtgaattatgtttgtatacatttatataaaaacaa 425  Q
    |||||||||| |||||||||||| ||||||||||||||| |   ||| ||| ||||| ||||| ||| ||||||| | || ||||||| |||||||||    
T  42481803 aattgattttaagtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgttcggatgcatttatctaaaaacaa 42481900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 507
Target Start/End: Complemental strand, 1411026 - 1410946
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatt 507  Q
    ||||||| |||| |||||||||| || || ||||| ||  || || || |||||| |||||||||||||||||||||||||    
T  1411026 aaatttgcgtgtgaaaatcaattctaaaaacaaaatctacaaattataacttcaaatagaatcaattctaaaggcaaaatt 1410946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 35105330 - 35105254
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagct-aaaatgaattgaaggtaaagtgaattatgtttg 404  Q
    |||||||||| |||||||||||||| ||||||||||||| | | ||| || |||||| | ||||||| |||||||||    
T  35105330 aattgattttgagtgaattgattttttaaaattgattctggatgaaagtggattgaatgaaaagtgatttatgtttg 35105254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 405
Target Start/End: Original strand, 48158913 - 48158991
Alignment:
Q  328 aaattgatttttagtgaattgattttgtaaaattgattctagctaaaa--tgaattgaaggtaaagtgaattatgtttgt 405  Q
    ||||||||| | ||||||||||||||||| ||||||||| | ||||||  ||| ||||||||||| || |||||||||||    
T  48158913 aaattgattgtgagtgaattgattttgtataattgattcaaactaaaaagtgagttgaaggtaaaatg-attatgtttgt 48158991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 597961 - 598034
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattct 495  Q
    ||||| |||||| ||||  | |||||||||||||||| ||||||  ||||| ||||||||| |||||||||||||    
T  597961 aacaataaattttagtgcaagaatcaattatagaatcgaaagctacaattt-tagcttcaagtagaatcaattct 598034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 492
Target Start/End: Original strand, 28725088 - 28725138
Alignment:
Q  442 aatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaat 492  Q
    |||||||||||||||||||||||  || |||||||||||| || |||||||    
T  28725088 aatcaattatagaatcaaaagctacaaattctagcttcaagtataatcaat 28725138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 481
Target Start/End: Complemental strand, 15050344 - 15050303
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    |||||||||| ||||||  |||||||||||||||||||||||    
T  15050344 aaaatcaattttagaatggaaagctctaatttctagcttcaa 15050303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 500
Target Start/End: Original strand, 41386836 - 41386909
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaagg 500  Q
    ||||||| |||| || ||||||| |||||| |||||||  || | |||||||||| ||||||||||||| ||||    
T  41386836 aaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctgaagg 41386909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 597862 - 597918
Alignment:
Q  335 tttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaa 390  Q
    ||||||||||||||| | ||||||||||||| | ||||||| ||| |||||||||||    
T  597862 tttttagtgaattgagtatgtaaaattgattttggctaaaactgagttgaaggtaaa 597918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 412
Target Start/End: Complemental strand, 35222106 - 35222074
Alignment:
Q  380 ttgaaggtaaagtgaattatgtttgtatacatt 412  Q
    ||||||||||||||| |||||||||||||||||    
T  35222106 ttgaaggtaaagtgatttatgtttgtatacatt 35222074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 421 - 507
Target Start/End: Original strand, 10324953 - 10325039
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatt 507  Q
    ||||| |||||||||||| |||||||||||||||||||||||||  |||||||| |||||| |||| ||||||||| ||||||||||    
T  10324953 aacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttctatcttcaagtagactcaattctagaggcaaaatt 10325039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 489
Target Start/End: Complemental strand, 3515979 - 3515820
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaat-gaattgaaggtaaagtgaattatgtttgtatacatttatataaaaacaaca 427  Q
    ||||| |||| |||||||||||| ||||||||||||||| |  ||||| || |||||||| |||||| || |||||| |||||||||  | ||    | |    
T  3515979 aattggttttgagtgaattgattatgtaaaattgattctggtgaaaattgagttgaaggtgaagtgatttgtgtttggatacatttagttgaatg--ata 3515882  T
Q  428 aatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatc 489  Q
    | ||||||||| |||||||||| |||||| |||||||  ||||||||||||||| |||||||    
T  3515881 attttgagtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaatc 3515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 493
Target Start/End: Original strand, 20026179 - 20026251
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    ||||| ||||||||||||| ||||||||| |||| | |||||||  ||||||||||||||| |||||||||||    
T  20026179 aacaataaatttgagtgttcaaatcaattctagagttaaaagcttgaatttctagcttcaagtagaatcaatt 20026251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 33693083 - 33693031
Alignment:
Q  429 atttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  33693083 atttgagtgtaaaaatcaattatagaatcaaaagctacaatttctagcttcaa 33693031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 28083909 - 28083975
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    ||||||| |||| ||||| |||||||||||||||||||  || |||||||||||| |||||||||||    
T  28083909 aaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaatcaatt 28083975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 47892416 - 47892478
Alignment:
Q  434 agtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattcta 496  Q
    |||||||||||||||| ||||||||||||||  |||||||||||| || |||||||| |||||    
T  47892416 agtgttaaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaatcagttcta 47892478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 11817228 - 11817276
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  11817228 aaaattgagtttgagtgaattgattttgtaaaattgattctaactaaaa 11817276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 506
Target Start/End: Complemental strand, 6021864 - 6021789
Alignment:
Q  431 ttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    |||||||| |||||| ||||||||||||||||||  |  | |||||||||| ||||||| |||||| |||||||||    
T  6021864 ttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaat 6021789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 28287351 - 28287426
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattcta 496  Q
    ||||| ||||||||||||||||||||||| || |||||||||||  || | || ||||||| ||||| ||||||||    
T  28287351 aacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaattcta 28287426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 22548210 - 22548248
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgatt 365  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  22548210 aaaattgattttaagtgaattgattttgtaaaattgatt 22548248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 47899425 - 47899387
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattct 367  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  47899425 aattgattttgagtgaattgattttgtaaaattgattct 47899387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 11049314 - 11049245
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattcta 496  Q
    ||||||| |||| |||||||||| ||||||||||||||  || | |||||||||| ||||||| ||||||    
T  11049314 aaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattcta 11049245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 29759677 - 29759632
Alignment:
Q  426 caaatttgagtgttaaaatcaattatagaatcaaaagctctaattt 471  Q
    ||||||||||||| ||||||||||||||||||| |||||| |||||    
T  29759677 caaatttgagtgtaaaaatcaattatagaatcagaagctccaattt 29759632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 493
Target Start/End: Original strand, 48549046 - 48549099
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    |||||||||| |||||||| |||||  ||||||||||||||| |||||||||||    
T  48549046 aaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatcaatt 48549099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 13344913 - 13344837
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttg 404  Q
    |||||||||| | ||||||||||||||| |||||||| | | ||||| ||| ||||| ||||||||| |||||||||    
T  13344913 aattgattttgattgaattgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgtttg 13344837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 24587976 - 24587905
Alignment:
Q  427 aaatttgagtgttaaaatcaattat--agaatcaaaagctctaatttct-agcttcaactagaatcaattct 495  Q
    |||||||||||||||||||||||||  |||||||||||||| ||| ||| | |||||| |||||||| ||||    
T  24587976 aaatttgagtgttaaaatcaattatagagaatcaaaagctccaatatctaaacttcaagtagaatcagttct 24587905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 38512493 - 38512453
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattct 367  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  38512493 aaaattgattttaagtgaattgattttgtaaaattaattct 38512453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 49537246 - 49537194
Alignment:
Q  324 tttaaaattgatttttagtgaattgattttgtaaaattgattctagctaaaat 376  Q
    ||||||||||| ||| | ||||||||||||||||| ||| |||||||||||||    
T  49537246 tttaaaattgactttgaatgaattgattttgtaaagttgtttctagctaaaat 49537194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 463
Target Start/End: Original strand, 213552 - 213594
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagc 463  Q
    |||||||||||||||| | |||||||||| |||||||||||||    
T  213552 aacaacaaatttgagtttaaaaatcaattctagaatcaaaagc 213594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 6574245 - 6574175
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa-ctagaatcaattcta 496  Q
    |||||||||| | ||||| |||| || |||||||||||||||||| |||||| ||  ||||||||||||||    
T  6574245 aaatttgagtctgaaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattcta 6574175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 499
Target Start/End: Original strand, 7790657 - 7790735
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaag 499  Q
    ||||| ||||||| |||| |||||||||||||||||| ||| ||  || |  || |||||| |||||||||||||||||    
T  7790657 aacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattctaaag 7790735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 505
Target Start/End: Complemental strand, 29964151 - 29964085
Alignment:
Q  439 taaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaa 505  Q
    |||||| |||| |||||| || | ||||||||| ||||||||| ||||||||||| |||||| ||||    
T  29964151 taaaataaattttagaattaataactctaatttatagcttcaagtagaatcaattataaaggaaaaa 29964085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 34387714 - 34387780
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    ||||||| |||| |||||||||||||||||||||||||  |||| | | |||||| || ||||||||    
T  34387714 aaatttgtgtgtgaaaatcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaatt 34387780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 421
Target Start/End: Complemental strand, 7524285 - 7524192
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    ||||||||||  ||||| ||||| | |||||||||||||| |||||| |||  | |||||||||||| || |||||| | |||||||| |||||    
T  7524285 aattgattttgggtgaactgattctataaaattgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaa 7524192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 15514998 - 15515075
Alignment:
Q  345 attgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    ||||||||||| ||||||| ||||||||||| ||| |||||||||||| || ||||| ||| ||| ||| || |||||    
T  15514998 attgattttgtgaaattgagtctagctaaaagtgagttgaaggtaaagcgatttatgattggataaattcatgtaaaa 15515075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 17284166 - 17284125
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaag 462  Q
    ||||| |||||||||||| |||||||||| ||||||||||||    
T  17284166 aacaataaatttgagtgtaaaaatcaattttagaatcaaaag 17284125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 45557475 - 45557398
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaatgaattgaaggtaaagtgaattatgtttg 404  Q
    |||||||||||| | | |||||||| ||||||||||||| | |||||| ||| | |||  |||||||| |||||||||    
T  45557475 aaaattgattttgaataaattgattgtgtaaaattgattatggctaaagtgagtcgaacataaagtgatttatgtttg 45557398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 493
Target Start/End: Complemental strand, 1514413 - 1514341
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    ||||| ||||||| |||| ||||||||||||| ||| |||||||  || | |||||||||| |||||| ||||    
T  1514413 aacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaataaatt 1514341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 475
Target Start/End: Complemental strand, 4458640 - 4458592
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctag 475  Q
    |||||||||| ||||| |||||  ||||||||||||||| |||||||||    
T  4458640 aaatttgagttttaaattcaatactagaatcaaaagctccaatttctag 4458592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 10325133 - 10325081
Alignment:
Q  454 aatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||| |||| |||||||| |||||||||||| ||||||| |||| |||||    
T  10325133 aatcaaatgctccaatttctaccttcaactagaaacaattctgaaggaaaaat 10325081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 35548963 - 35548923
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattct 367  Q
    |||||||||||| | | ||||||||||||||||||||||||    
T  35548963 aaaattgattttgatttaattgattttgtaaaattgattct 35548923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 40643069 - 40643033
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgatt 365  Q
    |||||||||| |||||||||||| |||||||||||||    
T  40643069 aattgattttgagtgaattgattctgtaaaattgatt 40643033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 33844047 - 33843987
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  33844047 aacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagcttcaa 33843987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 37439215 - 37439155
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    ||||| ||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  37439215 aacaataaaattgagtgtaaaaatcaattatagaattaaaagctataatttctagcttcaa 37439155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 2635227 - 2635148
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    |||||||||| |||||||||||| |||| |||||||||| ||| |||||||||||  | ||||||||||  |||||||||    
T  2635227 aaatttgagtcttaaaatcaattctagactcaaaagctccaatctctagcttcaagcataatcaattctggaggcaaaat 2635148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 506
Target Start/End: Original strand, 32818391 - 32818470
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||| |||  |||||||||| ||||||||||||||  || |||||||||||| |||||||||||||  |||||||||    
T  32818391 aaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaat 32818470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 43868310 - 43868215
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    |||||||||||| | |||||||||||||||||||| ||||||| ||||| | | ||||| ||||||||| || | |||| |||||||||| |||||    
T  43868310 aaaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggatacatttatgtaaaa 43868215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 506
Target Start/End: Original strand, 55927696 - 55927870
Alignment:
Q  342 tgaattgattttgtaaaattgattctagctaaaat-gaattgaaggtaaagtgaattatgtttgtatacatttatataaaa---------acaacaaatt 431  Q
    ||||||||||| ||||||||||||| || |||||| || ||| || ||| |||| ||||||||| ||||||| || |||||         |||| |||||    
T  55927696 tgaattgatttcgtaaaattgattccagttaaaattgagttggagttaatgtgatttatgtttggatacattcatgtaaaagtgacttgaacaataaatt 55927795  T
Q  432 tgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||| |  ||||||| |||||||| |||||  ||||| |||| |||| | ||||||||||| ||||||||||    
T  55927796 tgagtgtgacgatcaattctagaatcagaagctacaatttttagcctcaagtggaatcaattctgaaggcaaaat 55927870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 481
Target Start/End: Complemental strand, 8330167 - 8330126
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  8330167 aaaatcaattatagaatcaaaagctccaatttctagcttcaa 8330126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 2206364 - 2206431
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa-ctagaatcaatt 493  Q
    |||||||||||  |||||||||  ||||||||||||||| ||||| ||||||||| ||||||||||||    
T  2206364 aaatttgagtgcaaaaatcaatcctagaatcaaaagctccaatttttagcttcaagctagaatcaatt 2206431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 472
Target Start/End: Complemental strand, 4243457 - 4243406
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttc 472  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||| ||||||    
T  4243457 aacaataaatttgagtgtaaaaatcaattctagaatcaaaagctccaatttc 4243406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 472
Target Start/End: Complemental strand, 33843756 - 33843702
Alignment:
Q  418 aaaaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttc 472  Q
    |||||||| ||||||||||||||||||||||| ||| || |||||||| ||||||    
T  33843756 aaaaacaataaatttgagtgttaaaatcaattttaggataaaaagctccaatttc 33843702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 410
Target Start/End: Original strand, 38740287 - 38740369
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtataca 410  Q
    |||||||||| | |||||||||||||||||||||||| | | ||||| ||| |||||| | |||||| ||||||||| |||||    
T  38740287 aattgattttgaatgaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttggataca 38740369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 1048781 - 1048716
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaat 492  Q
    |||||||||||| | ||||||||||||||| ||||||| ||| ||||| ||| || ||||||||||    
T  1048781 aaatttgagtgtaagaatcaattatagaattaaaagctataaattctaactttaagtagaatcaat 1048716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 481
Target Start/End: Complemental strand, 10185265 - 10185204
Alignment:
Q  420 aaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    |||||| |||||||||||| || ||||||| ||||||||||||||  |||||||| ||||||    
T  10185265 aaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttctaccttcaa 10185204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 22250296 - 22250211
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||| |||||||||| |||||| |||||  |||||||||||||  ||||||| ||||||| ||||| |||| ||| | |||||||    
T  22250296 aacaataaatttgagtattaaaagcaatttcagaatcaaaagcttcaatttcttgcttcaagtagaaccaatcctagatgcaaaat 22250211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 499
Target Start/End: Complemental strand, 30357576 - 30357504
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaag 499  Q
    ||||||| |||| ||||||||||||| |||||||||||  || |   |||||||| |||||||||||||||||    
T  30357576 aaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattctaaag 30357504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 412
Target Start/End: Complemental strand, 36639951 - 36639883
Alignment:
Q  344 aattgattttgtaaaattgattctagctaaaatgaattgaaggtaaagtgaattatgtttgtatacatt 412  Q
    |||||||||||||||| ||||| |  || |||||| |||||| |||||||| ||||||||| |||||||    
T  36639951 aattgattttgtaaaactgattatgacttaaatgagttgaagataaagtgatttatgtttggatacatt 36639883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 12926928 - 12926995
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaatgaattgaaggtaaagtga 394  Q
    |||||||||||| | ||||||| |||| ||||||||||||   ||||||||| | |||||||||||||    
T  12926928 aaaattgattttgaatgaattggttttataaaattgattccgactaaaatgagtcgaaggtaaagtga 12926995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 495
Target Start/End: Complemental strand, 18597110 - 18597035
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa-ctagaatcaattct 495  Q
    ||||| || ||||| ||||||||||||||||||||||||||| |  || || |||||||||  |||||||||||||    
T  18597110 aacaataactttgaatgttaaaatcaattatagaatcaaaaggttcaaattatagcttcaagttagaatcaattct 18597035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 478
Target Start/End: Complemental strand, 20712710 - 20712664
Alignment:
Q  431 ttgagtgttaaaatcaattatagaatcaaaagctctaatttctagctt 478  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  20712710 ttgagtgtaaaaatcaattatagaat-aaaagctccaatttctagctt 20712664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 510
Target Start/End: Complemental strand, 2206580 - 2206498
Alignment:
Q  429 atttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa-ctagaatcaattctaaaggcaaaattgat 510  Q
    |||||||||| |||| ||||||||||||||||||||  ||| | |||||||||  ||||||||||| |  || ||||||||||    
T  2206580 atttgagtgtaaaaaacaattatagaatcaaaagctacaatgtttagcttcaagttagaatcaattatggagccaaaattgat 2206498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 2206900 - 2206850
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagct 477  Q
    |||||||||||||||| |||||| || |||||||||||| ||||| |||||    
T  2206900 aaatttgagtgttaaagtcaattctaaaatcaaaagctccaatttttagct 2206850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 493
Target Start/End: Complemental strand, 9064291 - 9064229
Alignment:
Q  431 ttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    |||||||| |||||||||| ||||||||||| ||  || |||||| ||||| |||||||||||    
T  9064291 ttgagtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaatt 9064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 20911810 - 20911848
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgatt 365  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  20911810 aaaattgattttgagtgaattgattatgtaaaattgatt 20911848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 51093309 - 51093243
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    |||||||||| ||||  ||||||||| || |||||||||||  ||||||||||| || |||||||||    
T  51093309 aaaatcaattgtagaggcaaaagctccaaattctagcttcagttagaatcaattatagaggcaaaat 51093243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 25405766 - 25405729
Alignment:
Q  325 ttaaaattgatttttagtgaattgattttgtaaaattg 362  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  25405766 ttaaaattgattttgagtgaattgattatgtaaaattg 25405729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 7066596 - 7066640
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctc 465  Q
    ||||| |||||||||||| |||||| ||| |||||||||||||||    
T  7066596 aacaataaatttgagtgtgaaaatccattgtagaatcaaaagctc 7066640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 493
Target Start/End: Complemental strand, 17714738 - 17714666
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    ||||| |||||||||||  |||||||||| || |||||||||||| |||||| |  || || |||||||||||    
T  17714738 aacaataaatttgagtgcaaaaatcaattctataatcaaaagctcgaatttcaaatttaaattagaatcaatt 17714666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 24364103 - 24364143
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattct 367  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  24364103 aaaattgattttgaatgaattgattatgtaaaattgattct 24364143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 34155867 - 34155819
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    ||||||| |||| |||||||| ||| |||||||||||||||| ||||||    
T  34155867 aaaattgtttttgagtgaattaattatgtaaaattgattctaactaaaa 34155819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 495
Target Start/End: Original strand, 14044 - 14202
Alignment:
Q  346 ttgattttgtaaaattgattctagctaaaat-gaattgaaggtaaagtgaattatgtttgtatacatttatataaa---------aacaacaaatttgag 435  Q
    |||||||||||||||||||||| |||| ||| || ||||||||||||||| ||||||||| ||||||| || | ||         || || |||||||||    
T  14044 ttgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgag 14143  T
Q  436 tgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattct 495  Q
    ||| |||||||||| |||||||| |||||   ||| |||||||||| |||||||||||||    
T  14144 tgtaaaaatcaattctagaatcataagct-agattgctagcttcaagtagaatcaattct 14202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 9461450 - 9461544
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaatgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    |||||||||||| ||| |||||||| | |||||||||||||  ||||||||||||| |  |||||||| || |||||| ||||||| ||||||||    
T  9461450 aaaattgattttgagttaattgattatttaaaattgattctgactaaaatgaattgcaactaaagtgatttgtgtttggatacattcatataaaa 9461544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 26100167 - 26100236
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattcta 496  Q
    ||||||| |||| |||||||||||||||||||||||||  || | |||||||||| ||||| ||||||||    
T  26100167 aaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattcta 26100236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 421
Target Start/End: Complemental strand, 32928064 - 32927971
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    |||||||||| || ||||||||| |||||||||||||||  |||||| ||| ||||||| ||||||| || |||||| ||||||| || |||||    
T  32928064 aattgattttgagggaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaa 32927971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 422
Target Start/End: Complemental strand, 3206231 - 3206135
Alignment:
Q  326 taaaattgatttttagtgaattgattttgtaaaattgattctagctaaaatgaattgaaggtaaagtgaattatgtttgtatacatttatataaaaa 422  Q
    ||||||||||||| ||  |||| ||||||||||||||||| ||  |||||  | || ||| |||| |||||| |||||| |||||||||||||||||    
T  3206231 taaaattgattttaagctaatttattttgtaaaattgattttacgtaaaaatagtttaagataaaatgaattttgtttgaatacatttatataaaaa 3206135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 507
Target Start/End: Original strand, 13418840 - 13418920
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatt 507  Q
    |||||||| |||||||||||||||| |||||||||||||  ||||||  ||| || ||||||||||| | ||| |||||||    
T  13418840 aaatttgaatgttaaaatcaattatggaatcaaaagctccgatttcttactttaagtagaatcaattttgaagacaaaatt 13418920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 495
Target Start/End: Complemental strand, 4554401 - 4554330
Alignment:
Q  425 acaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa-ctagaatcaattct 495  Q
    |||||||||||| | |||||||||| ||| ||||||||||| ||||||| |||||||  |||||||||||||    
T  4554401 acaaatttgagtataaaaatcaattttagtatcaaaagctcaaatttcttgcttcaagatagaatcaattct 4554330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 392
Target Start/End: Original strand, 7602042 - 7602105
Alignment:
Q  330 attgatttttagtgaattgattttgtaaaattgattctagct-aaaatgaattgaaggtaaagt 392  Q
    ||||||||| |||||||||||||| |||||||||||| | || ||||||||||||| |||||||    
T  7602042 attgattttgagtgaattgattttataaaattgattcgaactaaaaatgaattgaatgtaaagt 7602105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 422
Target Start/End: Complemental strand, 10368137 - 10368043
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattct-agctaaaatgaattgaaggtaaagtgaattatgtttgtatacatttatataaaaa 422  Q
    |||||||||| ||||||||| |||||||||||||||| | ||  ||| ||| ||||||||||||||| || |||||  ||||||| || ||||||    
T  10368137 aattgattttgagtgaattgtttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgatttgtgtttagatacattcatgtaaaaa 10368043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 13384675 - 13384741
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    ||||||| |||| |||||||||| ||||||||||||||  || || ||||||||| |||||||||||    
T  13384675 aaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 18355760 - 18355798
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgatt 365  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  18355760 aaaattgattttgagtgaattgattttgtaaaattgatt 18355798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 1820512 - 1820464
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    |||||||||||| ||||||||| |||||| ||||||||||| |||||||    
T  1820512 aaaattgattttgagtgaattggttttgttaaattgattctggctaaaa 1820464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 1854957 - 1854909
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    |||||||||||| ||||||||| |||||| ||||||||||| |||||||    
T  1854957 aaaattgattttgagtgaattggttttgttaaattgattctggctaaaa 1854909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 467
Target Start/End: Original strand, 3478728 - 3478764
Alignment:
Q  431 ttgagtgttaaaatcaattatagaatcaaaagctcta 467  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3478728 ttgagtgttaaaatcaattttagaatcaaaagctcta 3478764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 4336571 - 4336615
Alignment:
Q  331 ttgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    |||||||| |||||||||||||||||||||||||| | |||||||    
T  4336571 ttgattttgagtgaattgattttgtaaaattgattgtggctaaaa 4336615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 496
Target Start/End: Original strand, 15677850 - 15677906
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattcta 496  Q
    |||||||||| || ||||||||||| ||| | |||||||||| ||||||||||||||    
T  15677850 aaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaattcta 15677906  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 38868562 - 38868487
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggca 502  Q
    ||||||| |||| |||||||||||||||| ||||||||  || |  ||||||||| ||||||||||| || |||||    
T  38868562 aaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaattttagaggca 38868487  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 4950638 - 4950568
Alignment:
Q  346 ttgattttgtaaaattgattctagctaaaat-gaattgaaggtaaagtgaattatgtttgtatacatttat 415  Q
    |||||||| ||||||||||| | |||| ||| || ||||||||||||||| ||||||||| ||| ||||||    
T  4950638 ttgattttttaaaattgattattgctataattgagttgaaggtaaagtgatttatgtttggatatatttat 4950568  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 26559864 - 26559910
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa 375  Q
    |||||||||| |||||||||||||  |||||||||||||| ||||||    
T  26559864 aattgattttgagtgaattgatttgataaaattgattctaactaaaa 26559910  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 35550347 - 35550309
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgatt 365  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  35550347 aaaattgattttgattgaattgattttgtaaaattgatt 35550309  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 421
Target Start/End: Complemental strand, 18123398 - 18123305
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    |||||||||  |||||||||||  |||||||| || |||| |||||| ||||||||||||||| ||| || |||| | ||| |||||| |||||    
T  18123398 aattgatttagagtgaattgatgatgtaaaatcgactctaactaaaagtgaattgaaggtaaaatgatttgtgttggaatatatttatgtaaaa 18123305  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 421
Target Start/End: Complemental strand, 28805335 - 28805254
Alignment:
Q  341 gtgaattgattttgtaaaattgattctagct-aaaatgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 421  Q
    ||||| ||||||||||||| |||||| |  | ||||||| ||||| ||||| ||| ||||||||| ||||||| ||||||||    
T  28805335 gtgaagtgattttgtaaaactgattccaaataaaaatgatttgaaagtaaaatgatttatgtttgaatacattaatataaaa 28805254  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 410
Target Start/End: Complemental strand, 1373149 - 1373081
Alignment:
Q  343 gaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtataca 410  Q
    ||||||||||||||||||||||| | | ||||| ||| |||||| | |||||| ||||||||| |||||    
T  1373149 gaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttggataca 1373081  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 4336640 - 4336700
Alignment:
Q  421 aacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    ||||| |||||||||||| ||||| |||| || ||| |||||||| | |||||||||||||    
T  4336640 aacaataaatttgagtgtaaaaattaattctaaaataaaaagctcaattttctagcttcaa 4336700  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 384
Target Start/End: Complemental strand, 30706323 - 30706283
Alignment:
Q  345 attgattttgtaaaattgattctagct-aaaatgaattgaa 384  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  30706323 attgattttgtaaaattgattctaactgaaaatgaattgaa 30706283  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 38516416 - 38516328
Alignment:
Q  335 tttttagtgaattgattttgtaaaattgattctagctaa-aatgaattgaaggtaaagtgaattatgtttgtatacatttatataaaaa 422  Q
    |||| ||||||||||||||||| |||||||| | | ||| | ||| ||||| ||||||||| ||||||||| ||  |||||| ||||||    
T  38516416 ttttgagtgaattgattttgtagaattgattttcgataatagtgagttgaatgtaaagtgatttatgtttggatgtatttatgtaaaaa 38516328  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 410
Target Start/End: Complemental strand, 14299498 - 14299416
Alignment:
Q  329 aattgatttttagtgaattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgtttgtataca 410  Q
    |||| ||||| |||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||| || |||||| |||||    
T  14299498 aatttattttgagtgaattgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgtttgaataca 14299416  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 481
Target Start/End: Original strand, 24306110 - 24306171
Alignment:
Q  420 aaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    |||||| |||||||||||| ||||||||||||||||||||||| |  |||||||| ||||||    
T  24306110 aaacaataaatttgagtgtaaaaatcaattatagaatcaaaagttacaatttctaacttcaa 24306171  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 481
Target Start/End: Complemental strand, 24367206 - 24367145
Alignment:
Q  420 aaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    |||||| |||||||||||| ||||||||||||||||||||||| |  |||||||| ||||||    
T  24367206 aaacaataaatttgagtgtaaaaatcaattatagaatcaaaagttacaatttctaacttcaa 24367145  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 3738142 - 3738201
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaag 499  Q
    |||||||||||||||||||||| ||  || ||||| |||||||||||||||||| |||||    
T  3738142 aaaatcaattatagaatcaaaaactacaacttctaacttcaactagaatcaattttaaag 3738201  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 34250380 - 34250447
Alignment:
Q  435 gtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggca 502  Q
    |||| |||| ||||| ||||||||||||||  |||||||||| |||| |||||||||||||| |||||    
T  34250380 gtgtgaaaaacaattgtagaatcaaaagctacaatttctagcatcaagtagaatcaattctagaggca 34250447  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 42858172 - 42858093
Alignment:
Q  427 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    ||||||| |||| ||||||||||||||||| |||||||| || | ||| |||||| || ||||||||||| || ||||||    
T  42858172 aaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaattctagagtcaaaat 42858093  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 4848064 - 4848111
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaa 374  Q
    |||||||||||| |||||||| || |||||| ||||||||||||||||    
T  4848064 aaaattgattttgagtgaattaatgttgtaagattgattctagctaaa 4848111  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 506
Target Start/End: Complemental strand, 14299765 - 14299726
Alignment:
Q  467 aatttctagcttcaactagaatcaattctaaaggcaaaat 506  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  14299765 aatttctagcttcaactaaaatcaattctataggcaaaat 14299726  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 2124282 - 2124244
Alignment:
Q  327 aaaattgatttttagtgaattgattttgtaaaattgatt 365  Q
    |||||||||||| || |||||||||||||||||||||||    
T  2124282 aaaattgattttaagagaattgattttgtaaaattgatt 2124244  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 493
Target Start/End: Original strand, 18585325 - 18585394
Alignment:
Q  424 aacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    ||||||||||| | ||||||| |||| |||| ||||||||| |||||| |||||| || || ||||||||    
T  18585325 aacaaatttgattattaaaataaattttagattcaaaagctttaatttttagcttgaagtaaaatcaatt 18585394  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 481
Target Start/End: Complemental strand, 36927785 - 36927744
Alignment:
Q  440 aaaatcaattatagaatcaaaagctctaatttctagcttcaa 481  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
T  36927785 aaaatcaattttagaattaaaagctctaaattctagcttcaa 36927744  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 4975053 - 4975100
Alignment:
Q  328 aaattgatttttagtgaattgattttgtaaaattgattctagctaaaat 376  Q
    ||||| ||||| |||||||||||||| |||| |||||||||||||||||    
T  4975053 aaattaattttcagtgaattgattttataaa-ttgattctagctaaaat 4975100  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 403
Target Start/End: Original strand, 5465398 - 5465458
Alignment:
Q  344 aattgattttgtaaaattgattctagctaaaa-tgaattgaaggtaaagtgaattatgttt 403  Q
    |||||||||||||||||||||| ||| ||||| ||||||||| | ||| ||| ||||||||    
T  5465398 aattgattttgtaaaattgattttagataaaagtgaattgaatgaaaaatgatttatgttt 5465458  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 6951340 - 6951392
Alignment:
Q  441 aaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaatt 493  Q
    ||||||||||||||||||||||||  || | ||| |||||| |||||||||||    
T  6951340 aaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaatt 6951392  T

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