View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16047_low_6 (Length: 466)

Name: NF16047_low_6
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16047_low_6
NF16047_low_6
[»] chr4 (15 HSPs)
chr4 (19-354)||(3957537-3957872)
chr4 (352-456)||(3959176-3959280)
chr4 (19-349)||(3984753-3985083)
chr4 (22-348)||(4007672-4007998)
chr4 (23-348)||(4022830-4023155)
chr4 (21-349)||(3999874-4000202)
chr4 (110-348)||(3998681-3998919)
chr4 (249-343)||(3815439-3815533)
chr4 (247-354)||(3922309-3922416)
chr4 (247-345)||(3935669-3935767)
chr4 (21-119)||(3808083-3808181)
chr4 (19-126)||(3922078-3922185)
chr4 (23-79)||(3815697-3815753)
chr4 (55-126)||(3935474-3935545)
chr4 (303-345)||(3807848-3807890)
[»] chr8 (1 HSPs)
chr8 (352-456)||(19167917-19168021)
[»] scaffold0060 (1 HSPs)
scaffold0060 (352-407)||(18706-18761)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 3957537 - 3957872
Alignment:
Q  19 agtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgct 118  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957537 agtgttccagagtggttcaagtacaggacagcacaggatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgct 3957636  T
Q  119 tcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatctt 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957637 ccatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatctt 3957736  T
Q  219 catgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagaca 318  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3957737 catgtataggtattttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcacgctacctaactagcatagcaaaaaagcagaca 3957836  T
Q  319 aggtttaaaatcaaggttacagcaaggacaacaccc 354  Q
    ||||||||||||||||||||||||||||||||||||    
T  3957837 aggtttaaaatcaaggttacagcaaggacaacaccc 3957872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 352 - 456
Target Start/End: Original strand, 3959176 - 3959280
Alignment:
Q  352 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3959176 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 3959275  T
Q  452 ctgtg 456  Q
    |||||    
T  3959276 ctgtg 3959280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 3985083 - 3984753
Alignment:
Q  19 agtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgct 118  Q
    ||||||||||||||||| ||||||| |||| || |  ||||||||||| |||||||||| ||   |   |||||||||||||||||||||||||| ||||    
T  3985083 agtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctcaccacctcatctctcccctttgttgggctttgttttctgct 3984984  T
Q  119 tcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatctt 218  Q
    ||||||||||| |||||||| ||| |||  ||   || ||||| || ||| ||||| |||||| || || ||| |  ||||| |||||||||  |||||     
T  3984983 tcatccttgccgaggactccaaatattgcgacattatggaatttaacatctctacatttgatggtgagggtgacggtgaaaaagatggtgtcgatatcta 3984884  T
Q  219 catgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagaca 318  Q
    |||||||||| | | || || || |   | ||||||||| |||||||||||||||| ||||||||| | ||||||||| |||||||| ||||  ||||||    
T  3984883 catgtataggacatgttgctatactgaattagatcatgtgtgcatgatatacgaccaaccatgttctcactacctaaccagcatagccaaaagtcagaca 3984784  T
Q  319 aggtttaaaatcaaggttacagcaaggacaa 349  Q
      | |||||||||||||||||||||||||||    
T  3984783 caggttaaaatcaaggttacagcaaggacaa 3984753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 22 - 348
Target Start/End: Complemental strand, 4007998 - 4007672
Alignment:
Q  22 gttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttca 121  Q
    ||||| |||||||| | |||||  ||| |||| |||||||||||| ||||||||| |||   |   ||| ||||||||||||||||||||||||||||||    
T  4007998 gttcctgagtggttggcgtacaaaacaacacaggatgatatgattgttgatctctttccaaatcatctcccccctttgttgggctttgttttttgcttca 4007899  T
Q  122 tccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcat 221  Q
    |||||||  |||| | ||||  |||| | |||||||| || || |||| |||||||||||    ||||||||| |||||||||||||||||||| | |||    
T  4007898 tccttgctgaggattaccaacattgtgaacaaattgagttcaacatcagtacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacat 4007799  T
Q  222 gtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaagg 321  Q
    | ||||| |   | ||  || |   ||||||||||| ||||||||| |||||| || |||||| || |||||||||||  ||||||| || || ||||||    
T  4007798 gaataggacacctctcggtattgcatcagatcatgtgtgcatgatacacgaccaacgatgttctcggtacctaactagagtagcaaagaatcatacaagg 4007699  T
Q  322 tttaaaatcaaggttacagcaaggaca 348  Q
    |||||||||||||||||||||||||||    
T  4007698 tttaaaatcaaggttacagcaaggaca 4007672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 348
Target Start/End: Complemental strand, 4023155 - 4022830
Alignment:
Q  23 ttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcat 122  Q
    ||||||||||||| ||||||| |||| || | ||||| |||||| |||||||||||||   ||  |||||||||||| |||||||||||||||||||  |    
T  4023155 ttccagagtggttggagtacaagacaacaaaggatgacatgattgttgatctctctccacattatctctcccctttgctgggctttgttttttgctttgt 4023056  T
Q  123 ccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatg 222  Q
    |||||| ||||||  ||| | |||| ||| |||||||||||| |||||||||| ||||| ||  | ||| || ||||||| ||| |||| ||| | ||||    
T  4023055 ccttgctaaggacatccattattgtgaccgaattgaattgaacatcactacaaatgatgctgaaggtgacgatgaaaagggtggcgtcaatatatacatg 4022956  T
Q  223 tataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggt 322  Q
     ||||  |   | ||  || |   ||||||||||| |||||||||||||||| ||||| ||| | ||||||||||||||||||||| ||  ||| |||||    
T  4022955 gatagaacacgtctcggtattgcatcagatcatgtgtgcatgatatacgaccaaccattttctcactacctaactagcatagcaaacaataagagaaggt 4022856  T
Q  323 ttaaaatcaaggttacagcaaggaca 348  Q
    |||||||||||||||| |||||||||    
T  4022855 ttaaaatcaaggttacggcaaggaca 4022830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 349
Target Start/End: Complemental strand, 4000202 - 3999874
Alignment:
Q  21 tgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttc 120  Q
    ||||| ||||||||| ||||||| |||| || | ||||| |||||| || || |||||||  ||   |||||| |||||||||||||||||||||||||     
T  4000202 tgttcgagagtggttggagtacaagacaacagaggatgacatgattgttaatatctctccacttcatctctcctctttgttgggctttgttttttgcttt 4000103  T
Q  121 atccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttca 220  Q
     ||||||| |||| |||| | | ||||||| |||||| |||||| |||||| |||||||||||| || |||||  |||||||||||||||  ||| | ||    
T  4000102 gtccttgctaaggtctccaattattgttacaaaattgtattgaacatcactgcaattgatgttgagggtgatggtgaaaaggatggtgtcgatatataca 4000003  T
Q  221 tgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaag 320  Q
    || ||  |  |  | | | || |  |||||||||||| || ||||||||||||||||||| ||| |  ||||||||||| ||||| ||||| || |||||    
T  4000002 tggatgtggatcgtgtttgtaataattcagatcatgtgtgtatgatatacgacccaccattttctcagtacctaactagaatagcgaaaaatcatacaag 3999903  T
Q  321 gtttaaaatcaaggttacagcaaggacaa 349  Q
    ||| |||||||||||| ||||||||||||    
T  3999902 gttcaaaatcaaggttgcagcaaggacaa 3999874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 110 - 348
Target Start/End: Complemental strand, 3998919 - 3998681
Alignment:
Q  110 ttttttgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgt 209  Q
    |||||||||||||||||||  |||||| ||||  ||||   |||||||| || || ||||||||||||||||    ||||||||| |||||||| |||||    
T  3998919 ttttttgcttcatccttgctgaggactaccaacattgtgcacaaattgagttcaacatcactacaattgatgacaaggatgatgatgaaaaggacggtgt 3998820  T
Q  210 cagtatcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaa 309  Q
    |||||| | |||| ||||| |   | ||  || |   ||||||||||| ||||||||| || ||| || |||||| || |||||||||||  |||||||     
T  3998819 cagtatttacatgaataggacacctctcagtattgcatcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagtgtagcaaag 3998720  T
Q  310 aagcagacaaggtttaaaatcaaggttacagcaaggaca 348  Q
    || || |||||||||||||| ||||||||||||||||||    
T  3998719 aatcatacaaggtttaaaattaaggttacagcaaggaca 3998681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 343
Target Start/End: Complemental strand, 3815533 - 3815439
Alignment:
Q  249 agatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaa 343  Q
    ||||||||||||||||||| | |||| || ||||||  | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  3815533 agatcatgtatgcatgatacaggaccaacgatgttctgggtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaa 3815439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 3922309 - 3922416
Alignment:
Q  247 tcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaagga 346  Q
    ||||||||||| || ||||| ||||||| ||| ||||| |   |||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||    
T  3922309 tcagatcatgtgtgtatgatttacgaccaaccttgttctcagcacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcatgga 3922408  T
Q  347 caacaccc 354  Q
    ||| ||||    
T  3922409 caataccc 3922416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 3935669 - 3935767
Alignment:
Q  247 tcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaagg 345  Q
    ||||||||||| || ||||| ||||||| ||| || || |  ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  3935669 tcagatcatgtgtgtatgatttacgaccaaccttgctctcagtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaagg 3935767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 3808181 - 3808083
Alignment:
Q  21 tgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgctt 119  Q
    ||||||||||||||| ||||||| |||| || | ||||| | |||| |||||||||||||   |  ||||||||| |||||||||||||||||||||||    
T  3808181 tgttccagagtggtttgagtacaagacaacaaaggatgacaagattgttgatctctctccacctcacctctcccccttgttgggctttgttttttgctt 3808083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 3922078 - 3922185
Alignment:
Q  19 agtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgct 118  Q
    ||||||||| ||||||| ||||||| |||| ||   ||||  |||||| |||||||||||||  ||   ||||||||||||||||| |||||||||||||    
T  3922078 agtgttccaaagtggttggagtacaagacaacaatggatggcatgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttgct 3922177  T
Q  119 tcatcctt 126  Q
    | ||||||    
T  3922178 ttatcctt 3922185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 3815753 - 3815697
Alignment:
Q  23 ttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctc 79  Q
    ||||||||||||| ||||||| |||| || | |||||||||||||||||||||||||    
T  3815753 ttccagagtggttggagtacaagacaacaaaggatgatatgattattgatctctctc 3815697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 3935474 - 3935545
Alignment:
Q  55 gatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatcctt 126  Q
    ||||| |||||| |||||||||||||  ||   ||||||||||||||||| |||||||||||||| ||||||    
T  3935474 gatgacatgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttgctttatcctt 3935545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 3807890 - 3807848
Alignment:
Q  303 agcaaaaaagcagacaaggtttaaaatcaaggttacagcaagg 345  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||    
T  3807890 agcaaaaaatcaggcaaggtttaaaatcaaggttacagtaagg 3807848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 352 - 456
Target Start/End: Complemental strand, 19168021 - 19167917
Alignment:
Q  352 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 451  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||| ||    
T  19168021 cccattgagttcttaatatgctaacactcttcattgcagcagtactaggattgtttacctgatcttcatatctagcaacatgggcaatagccgtgtcaat 19167922  T
Q  452 ctgtg 456  Q
    |||||    
T  19167921 ctgtg 19167917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 407
Target Start/End: Complemental strand, 18761 - 18706
Alignment:
Q  352 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgttt 407  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  18761 cccattgagttcttaatatgcttacactcttcattgaagcagtactaggattgttt 18706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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