View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16047_low_7 (Length: 428)

Name: NF16047_low_7
Description: NF16047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16047_low_7
NF16047_low_7
[»] chr7 (8 HSPs)
chr7 (237-411)||(25760074-25760247)
chr7 (24-85)||(28427591-28427652)
chr7 (24-87)||(5484300-5484363)
chr7 (29-87)||(42470379-42470437)
chr7 (87-147)||(5484399-5484460)
chr7 (87-147)||(28427492-28427553)
chr7 (39-87)||(5266121-5266169)
chr7 (29-81)||(19250763-19250815)
[»] chr6 (2 HSPs)
chr6 (87-147)||(8326905-8326965)
chr6 (24-87)||(8327001-8327064)
[»] chr2 (2 HSPs)
chr2 (32-84)||(17161555-17161607)
chr2 (89-147)||(17161455-17161514)
[»] chr8 (2 HSPs)
chr8 (24-82)||(6931233-6931291)
chr8 (87-147)||(6931332-6931393)
[»] chr1 (4 HSPs)
chr1 (24-87)||(35562351-35562414)
chr1 (40-82)||(23992260-23992302)
chr1 (16-85)||(34336491-34336560)
chr1 (87-147)||(35562254-35562315)
[»] chr3 (1 HSPs)
chr3 (16-64)||(20226200-20226248)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 9e-80; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 237 - 411
Target Start/End: Original strand, 25760074 - 25760247
Alignment:
Q  237 gaatatgcgatgcgtgacacagggaagtgatgactttgtgtgccgtatgaaaactatttcactccaacttaggcagtacttgatgagttttctatgaaaa 336  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25760074 gaatatgcaatgcgtgacacagggaagtgatgactttgtgtgccgtatgaaaactatttcactccaacttaggcag-acttgatgagttttctatgaaaa 25760172  T
Q  337 ccattacactatcctatattctatgggttagttgggatagagtgtgaggagagctagatatggaagggtgggttt 411  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  25760173 ccattacactatcctattttctatgggttagttgggacagagtgtgtggagagctagatatggaagggtgggttt 25760247  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 28427652 - 28427591
Alignment:
Q  24 gtgaaaggtaggataagcaaaagctttcaagatatgatgcaaagatgataacacttgagtgc 85  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  28427652 gtgagaggtaggatgagcaaaagctttcaagatatgatgcagagaagataacacttgagtgc 28427591  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 5484300 - 5484363
Alignment:
Q  24 gtgaaaggtaggataagcaaaagctttcaagatatgatgcaaagatgataacacttgagtgcca 87  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  5484300 gtgagaggtaggatgagcaaaagctttcaagatatgatgcagagaagataacacttgagcgcca 5484363  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 42470437 - 42470379
Alignment:
Q  29 aggtaggataagcaaaagctttcaagatatgatgcaaagatgataacacttgagtgcca 87  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  42470437 aggtaggatgagcaaaagctttcaagatatgatgcagagaagataacacttgagcgcca 42470379  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 5484399 - 5484460
Alignment:
Q  87 acatttgttgcgagaacaccggatcttccacatgataacgggaccaa-tgggccaatatttg 147  Q
    ||||||||||||||||||||  |||||||| ||||||| |||||||| ||| ||||||||||    
T  5484399 acatttgttgcgagaacaccaaatcttccaaatgataatgggaccaattggcccaatatttg 5484460  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 28427553 - 28427492
Alignment:
Q  87 acatttgttgcgagaacaccggatcttccacatgataacgggaccaa-tgggccaatatttg 147  Q
    ||||||||||||||||||||  |||||||| ||||||| |||||||| ||| ||||||||||    
T  28427553 acatttgttgcgagaacaccaaatcttccaaatgataatgggaccaattggcccaatatttg 28427492  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 5266169 - 5266121
Alignment:
Q  39 agcaaaagctttcaagatatgatgcaaagatgataacacttgagtgcca 87  Q
    ||||||| |||| |||| |||| |||||||||||||||||||| |||||    
T  5266169 agcaaaaacttttaagacatgacgcaaagatgataacacttgattgcca 5266121  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 19250815 - 19250763
Alignment:
Q  29 aggtaggataagcaaaagctttcaagatatgatgcaaagatgataacacttga 81  Q
    ||||| || ||| ||||||||||||||||||||||||| | || |||||||||    
T  19250815 aggtatgagaagaaaaagctttcaagatatgatgcaaataagaaaacacttga 19250763  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 8326965 - 8326905
Alignment:
Q  87 acatttgttgcgagaacaccggatcttccacatgataacgggaccaatgggccaatatttg 147  Q
    |||||||||| |||||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  8326965 acatttgttgtgagaacaccaaatcttccacatgataatgggtccaatgggccaatatttg 8326905  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 8327064 - 8327001
Alignment:
Q  24 gtgaaaggtaggataagcaaaagctttcaagatatgatgcaaagatgataacacttgagtgcca 87  Q
    |||| |||||||||||| ||||| |||||||| |||||||| | ||||||||||||||||||||    
T  8327064 gtgagaggtaggataagaaaaagttttcaagacatgatgcagaaatgataacacttgagtgcca 8327001  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 17161607 - 17161555
Alignment:
Q  32 taggataagcaaaagctttcaagatatgatgcaaagatgataacacttgagtg 84  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||    
T  17161607 taggataagcaaatgctttcaagatatgatgcagagataataacacttgagtg 17161555  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 17161514 - 17161455
Alignment:
Q  89 atttgttgcgagaacaccggatcttccacatgataacgggaccaatg-ggccaatatttg 147  Q
    |||||||||||||||||   |||||||||||||||| |||||| ||| ||||||||||||    
T  17161514 atttgttgcgagaacacaaaatcttccacatgataatgggaccgatgaggccaatatttg 17161455  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 6931233 - 6931291
Alignment:
Q  24 gtgaaaggtaggataagcaaaagctttcaagatatgatgcaaagatgataacacttgag 82  Q
    |||| ||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||    
T  6931233 gtgagaggtaggatgagcaaaagctttcaagatatggtgcagagaagataacacttgag 6931291  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 6931332 - 6931393
Alignment:
Q  87 acatttgttgcgagaacaccggatcttccacatgataacgggaccaa-tgggccaatatttg 147  Q
    ||||||||||||||||||||  |||||||| ||||||| |||| ||| ||| ||||||||||    
T  6931332 acatttgttgcgagaacaccaaatcttccaaatgataatgggatcaattggcccaatatttg 6931393  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 35562414 - 35562351
Alignment:
Q  24 gtgaaaggtaggataagcaaaagctttcaagatatgatgcaaagatgataacacttgagtgcca 87  Q
    |||| ||||||||| |||||||||||||||||||| ||  | ||||||||||||| ||||||||    
T  35562414 gtgagaggtaggatgagcaaaagctttcaagatataattgagagatgataacactcgagtgcca 35562351  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 23992260 - 23992302
Alignment:
Q  40 gcaaaagctttcaagatatgatgcaaagatgataacacttgag 82  Q
    |||||||| |||||||||||||||| |||||||||||| ||||    
T  23992260 gcaaaagcattcaagatatgatgcagagatgataacacatgag 23992302  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 34336491 - 34336560
Alignment:
Q  16 tgaacaacgtgaaaggtaggataagcaaaagctttcaagatatgatgcaaagatgataacacttgagtgc 85  Q
    ||||||| |||| ||||||||||| |||||||| |||||| ||||| || |  ||||||||| |||||||    
T  34336491 tgaacaatgtgagaggtaggataaacaaaagctatcaagacatgatacacaagtgataacacctgagtgc 34336560  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 35562315 - 35562254
Alignment:
Q  87 acatttgttgcgagaacaccggatcttccacatgataacgggaccaatg-ggccaatatttg 147  Q
    ||||||||||||||||||||  ||||||||  |||||| ||||| |||| ||||||||||||    
T  35562315 acatttgttgcgagaacaccaaatcttccaagtgataatgggacaaatgaggccaatatttg 35562254  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 20226200 - 20226248
Alignment:
Q  16 tgaacaacgtgaaaggtaggataagcaaaagctttcaagatatgatgca 64  Q
    |||||||  ||| ||||||||||||||||||||||||||| ||||||||    
T  20226200 tgaacaatatgagaggtaggataagcaaaagctttcaagacatgatgca 20226248  T

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