View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16048_high_4 (Length: 250)
Name: NF16048_high_4
Description: NF16048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16048_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 51268447 - 51268679
Alignment:
| Q |
15 |
tcattcatactcattctactcacaaagaaaattctacttctattttcctcttacatatcttggctcttgtttctccaatcaatagtaacttcatttccat |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51268447 |
tcattcatactcattctactcactaagaaaattctacttctattttcctcttacatatcttggctcttgtttctccaatcaatagtaacttcatttccat |
51268546 |
T |
|
| Q |
115 |
ggctttcacagcctcgccaactataataagataccccatttcaaagcaaaatatggttgtttgtgacatgcttgataacacttgtaggaacaagttttca |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51268547 |
ggctttcacagcctcgccagctataataagaaaccccatttcaaagcaaaatatggttgtttgtgacatgcttgataacacttgtaggaaaaagttttca |
51268646 |
T |
|
| Q |
215 |
tttcgaaacaagggcatctataaaggccaacat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
51268647 |
tttcgaaacaagggcatctataaaggccaacat |
51268679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 23306487 - 23306719
Alignment:
| Q |
13 |
catcattcatactcattctactcacaaagaaaattctacttctattttcctcttacatatcttggctcttgtttctccaatcaatagtaacttcatttcc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23306487 |
catcattcatactcattctactcactaagaaaattttacttctattttcctataacatatttaggctcttgtttctccaatcaatagtaatttcatttcc |
23306586 |
T |
|
| Q |
113 |
atggctttcacagcctcgccaactataataagataccccatttcaaagcaaaatatggttgtttgtgacatgcttgataacacttgtaggaacaagtttt |
212 |
Q |
| |
|
||||||||||||||||| ||| || |||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
23306587 |
atggctttcacagcctcaccagctctaataagaaaccccatttcgaagcaaaatgtggttgtttgtgatatgcttgataacacttgtagggacaagtttt |
23306686 |
T |
|
| Q |
213 |
catttcgaaacaagggcatctataaaggccaac |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
23306687 |
catttcgaaacaagggcatctataaaggccaac |
23306719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University