View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16048_low_1 (Length: 378)
Name: NF16048_low_1
Description: NF16048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16048_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 8536951 - 8537311
Alignment:
| Q |
1 |
aaaaactactaactataactgaatcagtatcttaatcaacctaaccatttcttttcatgcccaaagtagattcagtgatgctctcaagcttcttcaacat |
100 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8536951 |
aaaaactactaactataactaaaacagtatcttaatcaacctaaccattttttttcatgcccaaagtagattcagtgatgctctcaagcttcttcaacat |
8537050 |
T |
|
| Q |
101 |
gttcacaaacacatatgtttcttcattcttgtcaccatcaagcaaatattcacattttgtaattagggaagtgatcttatttttgcttcgcgtaggaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
8537051 |
gttcacaaacacatatgtttcttcattcttgtcaccatcaagcaaatattcacattttgtaattagggaagtgatcttatttttgctttgcgtgggaagc |
8537150 |
T |
|
| Q |
201 |
aaagaactaacattcatatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtctt |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537151 |
aaagaactaacattcgtatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtctt |
8537250 |
T |
|
| Q |
301 |
ctgctttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttcc |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537251 |
ctgctttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttcc |
8537311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 361
Target Start/End: Original strand, 8601103 - 8601246
Alignment:
| Q |
218 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
317 |
Q |
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||||||||| ||||| ||| | |||| ||||| ||||||| | |||| ||||| | | ||||||||||||||| |||||||| |||||||||||||| |
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| T |
8601103 |
atccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatctttgaaattctca |
8601202 |
T |
|
| Q |
318 |
gcttcttgaattattctcttaatttcatcagttgataatcttcc |
361 |
Q |
| |
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|||||||| || ||||||| |||||| || ||||||| |||||| |
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| T |
8601203 |
gcttcttggatcattctctcaatttcttcggttgatagtcttcc |
8601246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 361
Target Start/End: Complemental strand, 8383911 - 8383772
Alignment:
| Q |
222 |
ttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagctt |
321 |
Q |
| |
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||||| |||||| ||| ||||| ||||| || ||||||||||| ||||| | | ||||||| | ||||| |||||||| || ||||||||||| || | |
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| T |
8383911 |
ttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcatgtcttcagccttgaaattctctgcct |
8383812 |
T |
|
| Q |
322 |
cttgaattattctcttaatttcatcagttgataatcttcc |
361 |
Q |
| |
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|||| || ||||||| |||||||||||||||||| ||||| |
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| T |
8383811 |
cttggatcattctctcaatttcatcagttgataaacttcc |
8383772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 218 - 361
Target Start/End: Original strand, 8544765 - 8544908
Alignment:
| Q |
218 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
317 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||| | |||||||||||| |||| ||| ||| || ||||||| ||||||| || |||||||| ||| |
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| T |
8544765 |
atccttcattactttcctcacattgtaaagataatactccaaagcatttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtca |
8544864 |
T |
|
| Q |
318 |
gcttcttgaattattctcttaatttcatcagttgataatcttcc |
361 |
Q |
| |
|
||||| || || ||||||| |||||| || ||||||||||||| |
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| T |
8544865 |
gcttcctggatcattctctcaatttcttcccttgataatcttcc |
8544908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 342
Target Start/End: Original strand, 8569465 - 8569567
Alignment:
| Q |
240 |
ttgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagcttcttgaattattctcttaa |
339 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||| ||| |||||| |||||||| ||||||| || ||||||||||||||||| || || ||||||| || |
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| T |
8569465 |
ttgtaaagataatcatccaaagcatttcttgcttcaactttctttttgaacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaa |
8569564 |
T |
|
| Q |
340 |
ttt |
342 |
Q |
| |
|
||| |
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|
| T |
8569565 |
ttt |
8569567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 352
Target Start/End: Original strand, 8609049 - 8609183
Alignment:
| Q |
218 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
317 |
Q |
| |
|
||||||||| |||||| || ||||| || || ||||||||| |||| ||||| | | |||||| || ||||| | |||||| |||||||||||||| |
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| T |
8609049 |
atccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctca |
8609148 |
T |
|
| Q |
318 |
gcttcttgaattattctcttaatttcatcagttga |
352 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| |
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| T |
8609149 |
gcttcttgaatcattctctcaatttcttcagttga |
8609183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 8580828 - 8580911
Alignment:
| Q |
217 |
tatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtctt |
300 |
Q |
| |
|
|||||| ||| |||||| |||| ||||| ||||| || ||||||||||||||||| | | |||||||||||||| ||||||| |
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| T |
8580828 |
tatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttgaactccatgtctt |
8580911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 29582792 - 29582737
Alignment:
| Q |
306 |
ttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttcc |
361 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||||| |||||||| |||||||| |
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|
| T |
29582792 |
ttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttcc |
29582737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 335
Target Start/End: Original strand, 8575431 - 8575548
Alignment:
| Q |
218 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
317 |
Q |
| |
|
||||||||| | |||| || |||||| ||||| || ||||| ||||||||||| | |||||||||||||| ||||||| || |||||| | ||| |
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| T |
8575431 |
atccttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttgaactccatgtcttgagccttgaaaatttca |
8575530 |
T |
|
| Q |
318 |
gcttcttgaattattctc |
335 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
8575531 |
gcttcttgaatcattctc |
8575548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 361
Target Start/End: Original strand, 12527635 - 12527779
Alignment:
| Q |
217 |
tatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctc |
316 |
Q |
| |
|
|||||||||| | |||| |||||| ||| |||||||||||||||||||| ||||| | | |||||| |||||||| || ||||| || ||||||||||| |
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| T |
12527635 |
tatccttcatgattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctc |
12527734 |
T |
|
| Q |
317 |
agcttcttgaattattctcttaatttcatcagttgataatcttcc |
361 |
Q |
| |
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|||||| || || |||||| |||||| ||| ||||||||||||| |
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|
| T |
12527735 |
agcttcctggatcattctcccaatttcttcacttgataatcttcc |
12527779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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