View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16048_low_4 (Length: 262)
Name: NF16048_low_4
Description: NF16048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16048_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 13919334 - 13919127
Alignment:
| Q |
39 |
cataagtagcataaaccacattttctggtgttttgtcattcctatataagatctgcacatcaatttaaaatcatggttttcattaatcaaaattaccatc |
138 |
Q |
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| T |
13919334 |
cataagtagcataaaccacattttctggtgttttgtcattccgatataagatctgcacatcaatttaaaatcatggttttcattaatcaaaattaccatc |
13919235 |
T |
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| Q |
139 |
tagaacaaccacattagaacacaaaaaataaaacagagtttattggaatcaacttaaaaactaaaaatcttcgccatcatcaatctagcaactcagaaat |
238 |
Q |
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| T |
13919234 |
tagaacaaccacattagaagacaaaaattaaaacagagtttattggaatcaacttaaaaactaaaaatcttcgccatcatcaatctagcaactcagaaat |
13919135 |
T |
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| Q |
239 |
ccttcaac |
246 |
Q |
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|||||||| |
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| T |
13919134 |
ccttcaac |
13919127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13919511 - 13919469
Alignment:
| Q |
1 |
acaacacatcacagttgttattttggcaaaaaatgttacataa |
43 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
13919511 |
acaacacatcacagttgttattgtggcaaaaaatgtttcataa |
13919469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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