View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16048_low_7 (Length: 204)
Name: NF16048_low_7
Description: NF16048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16048_low_7 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 28526719 - 28526540
Alignment:
| Q |
12 |
attatactgagatataaaatatcgagaaatattcatgcatcaaagaaacaaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgcaa |
111 |
Q |
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| T |
28526719 |
attacactgagatgtaaaatatcgagaaatattcatgcatcaaagaaacaaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgcaa |
28526620 |
T |
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| Q |
112 |
tttaatggagacaaccattttagatttagagagaccctctaacttctcgaagatgcttgcaattatccaatacagtttct |
191 |
Q |
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| T |
28526619 |
tttaatggagacaaccattttagatttagagagaccctctaacttctcgaagatgcttgcaattatccaatacagtttct |
28526540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 2170831 - 2170905
Alignment:
| Q |
59 |
acaaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgcaatttaatggagacaaccatttta |
133 |
Q |
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| T |
2170831 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcatttta |
2170905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 28151994 - 28151913
Alignment:
| Q |
57 |
aaacaaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgcaatttaatggagacaaccattttagattt |
138 |
Q |
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| T |
28151994 |
aaacaaaacctgattcagtagcatgtttctacatgaggaacttgatgatttacaattcaatgcagacaagcattttaaattt |
28151913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 28191334 - 28191281
Alignment:
| Q |
57 |
aaacaaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgca |
110 |
Q |
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| T |
28191334 |
aaacaaaacctgattcaatagcatgtttctacacgaggaagtcaatgatttgca |
28191281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 12430 - 12356
Alignment:
| Q |
59 |
acaaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgcaatttaatggagacaaccatttta |
133 |
Q |
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| T |
12430 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcatttta |
12356 |
T |
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