View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16049_high_3 (Length: 297)
Name: NF16049_high_3
Description: NF16049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16049_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 27489407 - 27489124
Alignment:
| Q |
1 |
acaatttctttacgtattttttcaacacagtcgacttattgtctcataagtgcaacttagtaaaaaataatttacnnnnnnnnnn-gatagtaaacattt |
99 |
Q |
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| T |
27489407 |
acaatttctttacgtattttttcaacacagtcgacttattgtctcataagtgcaacttagtaaaaaataatttacaaaaaaaaaaagatagtaaacattt |
27489308 |
T |
|
| Q |
100 |
gattacaggtttcaatccataatactcctcttctccgcaattgtttgatattgctaaattctttgagatnnnnnnnctgaacttattacttttcattatg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||| |
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| T |
27489307 |
gattacaggtttcaatccataatactcctcttctccgcaattgtttgatattgctaagttctttgagataaaaaaactgaactta---ctttttattatg |
27489211 |
T |
|
| Q |
200 |
gttaattgatgatcaaaatttacaacaattttaaagatttaatcatatataagaatttcatcttgatccattaagcgaaatattcat |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27489210 |
gttaattgatgatcaaaatttacaacaattttaaagatttaatcatatataagaatttcatcttgatccattaagcgaaatattcat |
27489124 |
T |
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