View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16049_high_7 (Length: 238)
Name: NF16049_high_7
Description: NF16049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16049_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 41581997 - 41581766
Alignment:
| Q |
18 |
ctaatctatcattatctaccctggcg-------tgtaagagacatatggatgaatgtaagatacaaataatataacttacatggaattttagaggcatca |
110 |
Q |
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| T |
41581997 |
ctaatctatcattatctaccctggcgagtggcgtgtaagagacatatggatgaatgtaagatacaaataatataacttacatggaattttagaggcatca |
41581898 |
T |
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| Q |
111 |
aggatatgcagagcaa----acatacacttagcaaagctagaatgaacactaacatcatctatgacagattgacagttatgtattatcgtattctaattt |
206 |
Q |
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| T |
41581897 |
agtatatgcagagcaattaaacatacacttagcaaagctagaatgaacactaacatcatctatgacagattgacagttatgtattatcgtattctaattt |
41581798 |
T |
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| Q |
207 |
gatagcttagtttctagtgtatcatagcaaca |
238 |
Q |
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| T |
41581797 |
gatagcttagtttctagtttatcatagcaaca |
41581766 |
T |
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