View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16049_low_11 (Length: 209)
Name: NF16049_low_11
Description: NF16049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16049_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 14727394 - 14727568
Alignment:
| Q |
17 |
aaaatctagtgaaaccagtgctcccttgccatcatatctacccctccaatatctttccaccagcacgaagaacaatacagaaaagcttcctcttcccaga |
116 |
Q |
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| T |
14727394 |
aaaatctagtgaaaccagtgctcccttgccatcatatctacccctccaatatctttccaccagcacgaagaacaatacagaaaagcttcctcttcccaga |
14727493 |
T |
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| Q |
117 |
ttcctctctacaaaatctctttcccgtatttctctatagaatctctttcctttatttctctactaatgcctctag |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14727494 |
ttcctctctacaaaatctctttcccgtatttctctatagaatctctttcctttatttctctactaatgcctctag |
14727568 |
T |
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Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 17596083 - 17595909
Alignment:
| Q |
17 |
aaaatctagtgaaaccagtgctcccttgccatcatatctacccctccaatatctttccaccagcacgaagaacaatacagaaaagcttcctcttcccaga |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17596083 |
aaaatctagtgaaacaagtgctcccttgccatcatatctacccctcgaatatctttccaccagcacgaagaacaatacagaaaagcttcctctccccaga |
17595984 |
T |
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| Q |
117 |
ttcctctctacaaaatctctttcccgtatttctctatagaatctctttcctttatttctctactaatgcctctag |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
17595983 |
ttcctctctacaaaatctctttcccgtatttctctatagaatctctttcctgtatttctccactaatgcctctag |
17595909 |
T |
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