View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16049_low_12 (Length: 208)
Name: NF16049_low_12
Description: NF16049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16049_low_12 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10770211 - 10770016
Alignment:
| Q |
1 |
tcaggctgctttcgaggttgttcgtctcacgagtatgcctcattaccctacaaagactaaggaagaattggcggctatcaagattcagacagcgttccgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10770211 |
tcaggctgctttcgaggttgttcgtctcacgagtatgcctcattaccctacaaagactaaggaagaattggcggctatcaagattcagacagcgttccgc |
10770112 |
T |
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| Q |
101 |
ggatatttggtatgattgtcttgttttttaattatttatttggcctaatgatagttaagctattacttacattaatcaaatcatgccctttttcat |
196 |
Q |
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| T |
10770111 |
ggatatttggtatgattgtcttgttttttaattatttatttggcctaatgatagttaagctattacttacattaatcaaatcatgccctttttcat |
10770016 |
T |
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Target: scaffold0259 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 14919 - 15100
Alignment:
| Q |
11 |
ttcgaggttgttcgtctcacgagtatgcctcattaccctacaaagactaaggaagaattggcggctatcaagattcagacagcgttccgcggatatttgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||||| |||||||| | ||||||||||| |
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| T |
14919 |
ttcgaggttgttcgtctcacgagtatgcctcattaccccacaaagaccaaggaagaattgtcatttatcaagattcatacagcgtttcacggatatttgg |
15018 |
T |
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| Q |
111 |
tatgattgtcttgttttttaattatttatttggcctaatgatagttaagctattacttacattaatcaaatcatgccctttttcat |
196 |
Q |
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| T |
15019 |
tatgactgtcttgtttttta----tttatatggtccaatgctattcaaactatcacctacatgaatcaaatcatgccctttttcat |
15100 |
T |
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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 35044918 - 35045099
Alignment:
| Q |
11 |
ttcgaggttgttcgtctcacgagtatgcctcattaccctacaaagactaaggaagaattggcggctatcaagattcagacagcgttccgcggatatttgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | | |||||||||| |||||||| | ||||||||||| |
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| T |
35044918 |
ttcgaggttgttcgtctcacgagtatgcctcattaccccacaaagaccaaggaagaattgtcatttttcaagattcatacagcgtttcacggatatttgg |
35045017 |
T |
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| Q |
111 |
tatgattgtcttgttttttaattatttatttggcctaatgatagttaagctattacttacattaatcaaatcatgccctttttcat |
196 |
Q |
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||||| |||||||||||||| ||||| ||| | |||| || | || |||| || ||||| ||||||||||||||||||||||| |
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| T |
35045018 |
tatgactgtcttgtttttta----tttatatggtccaatgttattcaaactatcacctacatgaatcaaatcatgccctttttcat |
35045099 |
T |
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