View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16049_low_2 (Length: 320)
Name: NF16049_low_2
Description: NF16049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16049_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 41115761 - 41116039
Alignment:
| Q |
19 |
gtctggccatgtttgaatgatcaaacacatattgtcctgtcctattattttctacctgcaaaaaggtaaacaacatacaaattaattaagagattcatat |
118 |
Q |
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| T |
41115761 |
gtctggccatgtttgaatgatcaaacacatattgtcctgtcctattattttctacctgcaaaaaggtaaacaacatacaaattaattaagagattcatat |
41115860 |
T |
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| Q |
119 |
aaggaagagttaaagttannnnnnnaataattccaggcagctttggacaaaaaggcttactatactaaggaactctgatctcacagttcactcgcaagct |
218 |
Q |
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| T |
41115861 |
aaggaagagttaaagttatttttttaataattccaggcagctttggacaaaaaggcatactataataaggaactctgatctcacagttcactcgcaagct |
41115960 |
T |
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| Q |
219 |
gcttcccgatgaaagactcaacagtatgaacagtgtcagggtctgcaacttccatcatgtccattatttctccctcaccaggaagagt |
306 |
Q |
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| T |
41115961 |
gcttcccgatgaaagactcaacagca---------tcagggtctgcaacttccatcatgtccattatttctccctcaccaggaagagt |
41116039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 184 - 306
Target Start/End: Original strand, 41102379 - 41102499
Alignment:
| Q |
184 |
taaggaactctgatctcacagttcactcgcaagctgcttcccgatgaaagactcaacagtatgaacagtgtcagggtctgcaacttccatcatgtccatt |
283 |
Q |
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| T |
41102379 |
taaggaactctgatctca--gttcactcgcaagctgcttcctgatgaaagaccgaacagtataaacagcatcagggtctgcaactttcatcatgtccatt |
41102476 |
T |
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| Q |
284 |
atttctccctcaccaggaagagt |
306 |
Q |
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| T |
41102477 |
atttctccctcaccaggcagagt |
41102499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 41102187 - 41102262
Alignment:
| Q |
19 |
gtctggccatgtttgaatgatcaaacacatattgtcctg---tcctattattttctacctgcaaaaaggtaaacaa |
91 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||| |
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| T |
41102187 |
gtctggccatgtttgaatgatcaaacacatattcgcctgagctcctattattttcaacctgcaaaaagggaaacaa |
41102262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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