View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16049_low_4 (Length: 293)
Name: NF16049_low_4
Description: NF16049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16049_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 34821251 - 34821446
Alignment:
| Q |
1 |
tttgatttcataattatcaacaatcatggactttgtgatattaatctagctttttggatccatcaatacatggtcaattgaaaccatattgatattaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34821251 |
tttgatttcataattatcaacaatcatggactttgtgatattaatctagctttttggatccatcaatacatggtcaattgaaaccatattgatattaaca |
34821350 |
T |
|
| Q |
101 |
aattgaaaaataaatgtacatgcatgaagtgtacttacagaagcccatctataaacaattgggaacccttgaaaaatgatctcatgaaacaatgag |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34821351 |
aattgaaaaataaatgtacatgcatgaagtgtacttacagaagcccatctataaacaattgggaacccttgaaaaatgatctcatgaaacaatgag |
34821446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 34826567 - 34826655
Alignment:
| Q |
188 |
aacaatgagcctgatgcacaaccatcacccaaatgacctccatctttgctataactttggagtatttttctcacatcaacagattttcc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34826567 |
aacaatgagcctgatgcacaaccatcacccaaatgacctccatctttgctataactttggagtatttttctcacatcaacagattttcc |
34826655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 34835565 - 34835688
Alignment:
| Q |
74 |
tcaattgaaaccatattgatattaacaaattgaaaaataaa--tgtacatgcatgaagtgtacttacagaagcccatctataaacaattgggaacccttg |
171 |
Q |
| |
|
|||||||||| ||| ||||| |||| |||||||| || ||| |||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34835565 |
tcaattgaaatcatcttgatcttaataaattgaagaaaaaaagtgtaaa-gcatgaaatgtacttacagaagcccatctataaacaattgggaaaccttg |
34835663 |
T |
|
| Q |
172 |
aaaaatgatctcatgaaacaatgag |
196 |
Q |
| |
|
|| || ||| ||||||||||||||| |
|
|
| T |
34835664 |
aagaaagatttcatgaaacaatgag |
34835688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 35335533 - 35335468
Alignment:
| Q |
130 |
tgtacttacagaagcccatctataaacaattgggaacccttgaaaaatgatctcatgaaacaatga |
195 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||| ||| ||||| ||||||||||| |
|
|
| T |
35335533 |
tgtacttacaggagcccatctataaacaattgggaagccttgtgaaaatatctcctgaaacaatga |
35335468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University