View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1604_low_1 (Length: 381)
Name: NF1604_low_1
Description: NF1604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1604_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 33161501 - 33161865
Alignment:
| Q |
1 |
aggcataagttgcgacgatgctaaggatcaaggcccataaaacgtttccgttggatttatccaccacggtcaagctaaggcccaatagcgtaagtccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161501 |
aggcataagttgcgacgatgctaaggatcaaggcccataaaacgtttccgttggatttatccaccacggtcaagctaaggcccaatagcgtaagtccaat |
33161600 |
T |
|
| Q |
101 |
aatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttgttaaacctact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161601 |
aatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttgttaaacctact |
33161700 |
T |
|
| Q |
201 |
ccaatagttgcaagtaaaagcttttctttacttgtaataccagcttttctgaaaattctcggactatataacataacagcttcaataccagttgcatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161701 |
ccaatagttgcaagtaaaagcttttctttacttgtaataccagcttttctgaaaattctcggactatataacataacagcttcaataccagttgcatgtt |
33161800 |
T |
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| Q |
301 |
cgaaaaaatgaatcccaactgcagcaattaacatccaacgtacagaaggcgttggtcttaaaatc |
365 |
Q |
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| T |
33161801 |
cgaaaaaatgaatcccaactgcagcaattaacatccaacgtacagaaggcgttggtcttaaaatc |
33161865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 90 - 365
Target Start/End: Original strand, 31988421 - 31988696
Alignment:
| Q |
90 |
gtaagtccaataatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttg |
189 |
Q |
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||||||||||||||||||||| | ||||||| ||| || | | ||||||||||| ||| |||| ||||| ||||||| |||||| |||| ||| |||| |
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| T |
31988421 |
gtaagtccaataatcattcctgcagtgctaacttgtaataaccttcttctaccaactttatcaatcaaaaataaagcaagtacaagaaaaataatctttg |
31988520 |
T |
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| Q |
190 |
ttaaacctactccaatagttgcaagtaaaagcttttctttacttgtaataccagcttttctgaaaattctcggactatataacataacagcttcaatacc |
289 |
Q |
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|||| || || ||||| |||||||| ||||| |||||||||||| |||||||||||||| | || ||| | ||||||||||||||||||||||||| || |
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| T |
31988521 |
ttaatccaacaccaattgttgcaagcaaaagattttctttacttttaataccagcttttttaaatattttatgactatataacataacagcttcaattcc |
31988620 |
T |
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| Q |
290 |
agttgcatgttcgaaaaaatgaatcccaactgcagcaattaacatccaacgtacagaaggcgttggtcttaaaatc |
365 |
Q |
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||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
31988621 |
agttgcatgctcgaaaaaatgtattccaactgaagcaattaacatccaacgtacagcaggtgttggtcttaaaatc |
31988696 |
T |
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