View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1604_low_3 (Length: 234)
Name: NF1604_low_3
Description: NF1604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1604_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 362807 - 363031
Alignment:
| Q |
1 |
tcatgtcatatattccatcactgcgtttggttcttcacaacagtactggtcctgctacttcttggatacagatacactaaactggccttggaaatggaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
362807 |
tcatgtcatatattccatcactgcgtttggttcttcacaacagtactggtcctgctacttcttggatacagatacactaaactggccttggaaatggaat |
362906 |
T |
|
| Q |
101 |
gatcactttcatcttcctcaaagtaacaaggtttatcctcatcaattctccccatctttctcacctcagtctgatagctcattttatttctattatattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
362907 |
gatcactttcatcttcctcaaagtaacaaggtttatcctcatcaattctccccatctttctcacctcagtctgatagctcattttatttctattatattt |
363006 |
T |
|
| Q |
201 |
atatcccgcaatccgctgcctttgc |
225 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
363007 |
ataccccgcaatccgctgcctttgc |
363031 |
T |
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