View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16050_high_1 (Length: 387)

Name: NF16050_high_1
Description: NF16050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16050_high_1
NF16050_high_1
[»] chr2 (6 HSPs)
chr2 (15-162)||(25557788-25557936)
chr2 (252-355)||(25558449-25558552)
chr2 (160-249)||(25558086-25558173)
chr2 (83-162)||(4865477-4865555)
chr2 (62-140)||(37828446-37828523)
chr2 (62-115)||(4865686-4865739)
[»] chr7 (7 HSPs)
chr7 (62-162)||(1505543-1505643)
chr7 (62-150)||(23457411-23457499)
chr7 (62-150)||(23533269-23533357)
chr7 (62-162)||(23474929-23475029)
chr7 (62-108)||(23443335-23443381)
chr7 (63-107)||(2169278-2169322)
chr7 (61-110)||(25921030-25921081)
[»] chr5 (5 HSPs)
chr5 (62-162)||(17476169-17476268)
chr5 (73-140)||(7148294-7148360)
chr5 (62-140)||(38299728-38299804)
chr5 (61-123)||(15238958-15239020)
chr5 (60-108)||(41048646-41048694)
[»] chr1 (3 HSPs)
chr1 (60-150)||(27630998-27631088)
chr1 (60-111)||(51249165-51249216)
chr1 (62-150)||(42175252-42175340)
[»] chr6 (3 HSPs)
chr6 (62-162)||(1706803-1706903)
chr6 (63-159)||(34448430-34448526)
chr6 (60-115)||(5449483-5449539)
[»] chr3 (2 HSPs)
chr3 (61-162)||(30259605-30259706)
chr3 (65-115)||(30259869-30259919)
[»] chr4 (2 HSPs)
chr4 (83-162)||(53801506-53801585)
chr4 (62-162)||(12828554-12828655)
[»] chr8 (2 HSPs)
chr8 (62-115)||(13706221-13706274)
chr8 (62-102)||(1410470-1410510)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 25557788 - 25557936
Alignment:
Q  15 gaacctgtgacccaaatatggcaatgcgagtagtatatactcatattgaaaattgttcttctcccaataaaaaa-cgttcactcccatataaactgacca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||||||||| ||||||||||    
T  25557788 gaacctgtgacccaaatatggcaatgcgagtagtatatactcatattaaaaattgctcttcttccaacaaaaaaacgctcactcccatacaaactgacca 25557887  T
Q  114 aagtactccccacgtgtgttaactcacattcggtaagataaagtataac 162  Q
    || |||||||||||||||||||||||||||||||||||| |||||||||    
T  25557888 aaatactccccacgtgtgttaactcacattcggtaagatgaagtataac 25557936  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 25558449 - 25558552
Alignment:
Q  252 atgtaaggctgatagtaaaagttttaaactaagcccaataagcccattacacaacctgttaaaaacaaaacacaactcttaaatccctatttcacaacac 351  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25558449 atgtaaggctggtagtaaaagttttaaactaagcctaataagcccattacacaacctgttaaaaacaaaacacaactcctaaatccctatttcacaacac 25558548  T
Q  352 aggt 355  Q
    ||||    
T  25558549 aggt 25558552  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 25558086 - 25558173
Alignment:
Q  160 aacaacaaataggtaattaaatcccctaaaacacaaataggtaattttaattaagaaaaaagagcaaaattatatccattttagcaatta 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  25558086 aacaacaaataggtaattaaatcccctaaaacacaaataggtaa--ttaattaagaaaaaagagcaaaattagatccattttagcaatta 25558173  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 4865477 - 4865555
Alignment:
Q  83 aaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaagataaagtataac 162  Q
    ||||||||||||||| |||| ||||| |||||| ||| ||||||||| |||||||||| || |||||| | |||||||||    
T  4865477 aaaaaacgttcactctcatacaaacttaccaaaatac-ccccacgtgagttaactcacgtttggtaagctgaagtataac 4865555  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 37828446 - 37828523
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcac 140  Q
    |||||||| ||||||||||| |||||||| |||||| |||| |||||||||||| ||| || | |||| ||||||||||    
T  37828446 gaaaattgctcttctcccaacaaaaaacgatcactcacatacaaactgaccaaaatac-cctcgcgtgagttaactcac 37828523  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 4865739 - 4865686
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaa 115  Q
    |||||||| ||| ||||||| |||||| ||||||||||||| ||||||||||||    
T  4865739 gaaaattgctctcctcccaacaaaaaatgttcactcccatacaaactgaccaaa 4865686  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 1505543 - 1505643
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaagataaagtataa 161  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||| ||||||| ||| | ||| ||| ||||||||||||||| |||| | ||||||||    
T  1505543 gaaaattgctcttctcccaacaaaaaacgtttactcccatataaaccgaccaaaataccctccatgtgagttaactcacattcgataagctgaagtataa 1505642  T
Q  162 c 162  Q
    |    
T  1505643 c 1505643  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 23457499 - 23457411
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaag 150  Q
    ||||||||||||||||| || |||||||| ||||||||||| ||||| |||||| |||   ||||||| ||||||||||||| ||||||    
T  23457499 gaaaattgttcttctccaaacaaaaaacgctcactcccataaaaacttaccaaaataccttccacgtgagttaactcacatttggtaag 23457411  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 23533269 - 23533357
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaag 150  Q
    |||||||||||||||||||| |||||| | ||||||||||| ||||| |||||| ||| | ||||||| |||||||||| || ||||||    
T  23533269 gaaaattgttcttctcccaacaaaaaatgctcactcccataaaaacttaccaaaatacccaccacgtgagttaactcacgtttggtaag 23533357  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 23474929 - 23475029
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaagataaagtataa 161  Q
    |||||||||||||||||||| |||||||| || |||||||| ||| | |||||| ||| | ||| ||| |||||||||| || |||||| | ||||||||    
T  23474929 gaaaattgttcttctcccaacaaaaaacgctctctcccataaaaatttaccaaaataccctccatgtgagttaactcacgtttggtaagttgaagtataa 23475028  T
Q  162 c 162  Q
    |    
T  23475029 c 23475029  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 23443335 - 23443381
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaact 108  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||    
T  23443335 gaaaattgttcttctcccaacaaaaaacgctcactcccataaaaact 23443381  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 2169322 - 2169278
Alignment:
Q  63 aaaattgttcttctcccaataaaaaacgttcactcccatataaac 107  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||||    
T  2169322 aaaattgctcttctcccaacaaaaaacgctcactcccatacaaac 2169278  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 25921030 - 25921081
Alignment:
Q  61 tgaaaattgttcttctcccaataaaa--aacgttcactcccatataaactga 110  Q
    ||||||||||||||| ||||| ||||  |||||||||||||||| |||||||    
T  25921030 tgaaaattgttcttcacccaacaaaaaaaacgttcactcccatacaaactga 25921081  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 17476268 - 17476169
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaagataaagtataa 161  Q
    |||||||||||||||||||| ||||||||||| ||| |||| |||||||||||| ||| | ||||||| |||||||| | ||||||||| ||||||||||    
T  17476268 gaaaattgttcttctcccaacaaaaaacgttcgctctcatacaaactgaccaaaatac-ctccacgtgagttaactcgcgttcggtaagctaaagtataa 17476170  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 7148294 - 7148360
Alignment:
Q  73 ttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcac 140  Q
    ||||||||| |||||| | ||||||||||| |||||||||||| ||||||| ||||| ||||||||||    
T  7148294 ttctcccaacaaaaaa-gctcactcccatacaaactgaccaaaatactccctacgtgagttaactcac 7148360  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 38299728 - 38299804
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcac 140  Q
    |||||||| ||||||||||| |||| ||||||||||||||| |||||||| ||| |||| ||| |||| ||||||||||    
T  38299728 gaaaattgctcttctcccaa-aaaagacgttcactcccatacaaactgactaaaatact-cccgcgtgagttaactcac 38299804  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 15239020 - 15238958
Alignment:
Q  61 tgaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccc 123  Q
    ||||||||| ||||||||||| |||||||| |||||||||  | || |||| |||||||||||    
T  15239020 tgaaaattgctcttctcccaacaaaaaacgctcactcccaactgaattgacgaaagtactccc 15238958  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 41048646 - 41048694
Alignment:
Q  60 ttgaaaattgttcttctcccaataaaaaacgttcactcccatataaact 108  Q
    |||||||||| ||||||||||| ||||||||  |||||||||| |||||    
T  41048646 ttgaaaattgctcttctcccaacaaaaaacgcacactcccatacaaact 41048694  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 27630998 - 27631088
Alignment:
Q  60 ttgaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaag 150  Q
    |||||||| | ||||||||||| |||||||| |||||||||||||||||||| |||  ||  |||||||| |||||||||| |||||||||    
T  27630998 ttgaaaatagctcttctcccaacaaaaaacgctcactcccatataaactgactaaaacacatcccacgtgagttaactcacgttcggtaag 27631088  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 51249165 - 51249216
Alignment:
Q  60 ttgaaaattgttcttctcccaataaaaaacgttcactcccatataaactgac 111  Q
    |||||||||| ||||||||||| |||| |||| ||||| |||||||||||||    
T  51249165 ttgaaaattgctcttctcccaacaaaagacgtgcactctcatataaactgac 51249216  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 42175340 - 42175252
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaag 150  Q
    |||||||| ||||||||||| |||||||  ||||||||||| |||| || | || ||  | ||||||| ||||||||||  ||||||||    
T  42175340 gaaaattgctcttctcccaacaaaaaacactcactcccatacaaaccgatcgaaatatcctccacgtgagttaactcacgctcggtaag 42175252  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 1706903 - 1706803
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaagataaagtataa 161  Q
    ||||| || ||||||||||| ||||||  ||||||| |||||||||||| |||||||| | ||||||| |||||||||  ||||||||| | ||||||||    
T  1706903 gaaaactgctcttctcccaacaaaaaagattcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 1706804  T
Q  162 c 162  Q
    |    
T  1706803 c 1706803  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 34448526 - 34448430
Alignment:
Q  63 aaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaagataaagtat 159  Q
    ||||||| |||||||| || |||||||  |||| |||||| |||||||||||| ||| |||||||||||||| ||||| || |||||| | ||||||    
T  34448526 aaaattgctcttctccaaacaaaaaacactcacgcccatacaaactgaccaaaataccccccacgtgtgttagctcacgtttggtaagctgaagtat 34448430  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 5449483 - 5449539
Alignment:
Q  60 ttgaaaattgttcttctcccaataaaaaa-cgttcactcccatataaactgaccaaa 115  Q
    |||||||||| |||||||| || |||||| |||||||||||||| ||||||||||||    
T  5449483 ttgaaaattgctcttctccaaacaaaaaagcgttcactcccatacaaactgaccaaa 5449539  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 30259605 - 30259706
Alignment:
Q  61 tgaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaagataaagtata 160  Q
    |||||||||  |||| ||||| |||||||| |||||  |||| |||||||||||| |||||  |||||| |||||||||| |||||| |||| |||||||    
T  30259605 tgaaaattgcgcttcacccaacaaaaaacgatcactttcatacaaactgaccaaaatactcgtcacgtgagttaactcacgttcggtcagatgaagtata 30259704  T
Q  161 ac 162  Q
    ||    
T  30259705 ac 30259706  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 30259919 - 30259869
Alignment:
Q  65 aattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaa 115  Q
    ||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||    
T  30259919 aattgctcttctcccaacaaaaaacgctcactcccatacaaactgatcaaa 30259869  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 53801585 - 53801506
Alignment:
Q  83 aaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaagataaagtataac 162  Q
    ||||||||||||||| || | |||||||||||| ||||| ||||||| |||||||||| |||| |||| | |||||||||    
T  53801585 aaaaaacgttcactctcaaacaaactgaccaaaatactctccacgtgagttaactcacgttcgataagctgaagtataac 53801506  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 12828655 - 12828554
Alignment:
Q  62 gaaaattgttcttctcccaat-aaaaaacgttcactcccatataaactgaccaaagtactccccacgtgtgttaactcacattcggtaagataaagtata 160  Q
    |||||||  |||||||||||  |||||| |||||||| |||| |||||||||||| ||   | |||||| |||||||||| ||||||||||| |||||||    
T  12828655 gaaaatttctcttctcccaaccaaaaaatgttcactctcatacaaactgaccaaaatatctctcacgtgagttaactcacgttcggtaagatgaagtata 12828556  T
Q  161 ac 162  Q
    ||    
T  12828555 ac 12828554  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 13706274 - 13706221
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaa 115  Q
    |||||||| |||||| ||| ||||||||||||||||||||| ||||| ||||||    
T  13706274 gaaaattgctcttctaccattaaaaaacgttcactcccatacaaactaaccaaa 13706221  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 1410470 - 1410510
Alignment:
Q  62 gaaaattgttcttctcccaataaaaaacgttcactcccata 102  Q
    ||||||||||||||| |||| |||||||||||||| |||||    
T  1410470 gaaaattgttcttcttccaacaaaaaacgttcacttccata 1410510  T

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