View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16050_low_1 (Length: 304)
Name: NF16050_low_1
Description: NF16050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16050_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 30877843 - 30877556
Alignment:
| Q |
1 |
atggaaggttatgatatatttggagatgctactgagagaattagtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggttcaagtt |
100 |
Q |
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| T |
30877843 |
atggaaggttatgatatatttggagatgctactgagagaattggtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggttcaagtt |
30877744 |
T |
|
| Q |
101 |
tctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttgaagcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877743 |
tctctctggttttggatagggagagaggggagcttgtagaggaacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttgaagcttt |
30877644 |
T |
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| Q |
201 |
gaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttg |
288 |
Q |
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| T |
30877643 |
gaagaatcatagtgaggcagaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttg |
30877556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 73 - 281
Target Start/End: Complemental strand, 39332933 - 39332728
Alignment:
| Q |
73 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
172 |
Q |
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| T |
39332933 |
gtaaatggaaatggatatggttcatcttcttcactggttttagatagagaaaaaggagagcttgtggaggcagctgtgaaattggaaagaaagggtgtat |
39332834 |
T |
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| Q |
173 |
ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt |
272 |
Q |
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| T |
39332833 |
cacct---gagagaagtattgaagctttgaagaatcatagtgaagcagaaagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgt |
39332737 |
T |
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| Q |
273 |
cattccagg |
281 |
Q |
| |
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|||||||| |
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| T |
39332736 |
tattccagg |
39332728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 30203705 - 30203571
Alignment:
| Q |
73 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
172 |
Q |
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|||| ||||| ||| ||||||||| || || |||||||||||||| || | ||| ||| |||| |||||| |||| ||| | ||| |||||||||||| |
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| T |
30203705 |
gtaaatggaaatggatatggttcatcttcttcgctggttttggatagagaaaaaggagagtttgtggaggcaactgtgaaattagaaagaaagggtgtgt |
30203606 |
T |
|
| Q |
173 |
ccactacagagagaagtgttgaagctttgaagaatcat |
210 |
Q |
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| || ||||||||| |||||||||||||||||||| |
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| T |
30203605 |
cacct---gagagaagtattgaagctttgaagaatcat |
30203571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 273
Target Start/End: Complemental strand, 12102677 - 12102483
Alignment:
| Q |
73 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
172 |
Q |
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|||| ||||||||| ||||||||| || || |||||||||||||| || | ||| |||||||| |||||| |||| ||| | ||| |||||||||||| |
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| T |
12102677 |
gtaaatggaagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgtggaggcagctgtgaaattagaaagaaagggtgtgt |
12102578 |
T |
|
| Q |
173 |
ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt |
272 |
Q |
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| || | ||||||| | ||||||||||||||||||||||| || || |||||||||||| || |||||| |||||||||||| |||||| |||| |
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| T |
12102577 |
cacct---gggagaagtatcgaagctttgaagaatcatagtgaagcaga---gaggagaagagcaagaattaatttacatcttgatacacttcgtagtgt |
12102484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 215
Target Start/End: Complemental strand, 17146603 - 17146474
Alignment:
| Q |
81 |
aagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactaca |
180 |
Q |
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|||||| ||||||||| || || |||||||||||||| || | ||| ||||||| |||||| |||| ||| | ||| |||||||||| ||| | |
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| T |
17146603 |
aagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgcggaggcagctgtgaaattagaaagaaagggtgt---cac--ct |
17146509 |
T |
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| Q |
181 |
gagagaagtgttgaagctttgaagaatcatagtga |
215 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
17146508 |
gagagaagtattgaagctttgaagaatcatagtga |
17146474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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